A. Alkaaby, M. Leblanc, and M. Perissol, Minéralisation diagénétique précoce (Pb-Zn-Ba) dans un environnement détritique continental : cas du Trias de Carnouì es, Compte rendu de l'Académie des Sciences de Paris, pp.919-922, 1985.

C. A. Appelo, M. J. Van-der-weiden, C. Tournassart, and L. Charlet, Surface Complexation of Ferrous Iron and Carbonate on Ferrihydrite and the Mobilization of Arsenic, Environmental Science & Technology, vol.36, issue.14, pp.363096-3103, 2002.
DOI : 10.1021/es010130n

D. E. Atkinson, Cellular energy metabolism and its regulation, 1977.

J. Baranyi and T. A. Roberts, A dynamic approach to predicting bacterial growth in food, International Journal of Food Microbiology, vol.23, issue.3-4, pp.277-294, 1994.
DOI : 10.1016/0168-1605(94)90157-0

R. C. Barry, J. L. Schnoor, B. Sulzberger, L. Sigg, and W. Stumm, Iron oxidation kinetics in an acidic alpine lake, Water Research, vol.28, issue.2, pp.323-333, 1994.
DOI : 10.1016/0043-1354(94)90270-4

F. Battaglia-brunet, M. Dictor, F. Garrido, C. Crouzet, D. Morin et al., An arsenic(III)-oxidizing bacterial population: selection, characterization, and performance in reactors, Journal of Applied Microbiology, vol.6, issue.4, pp.656-667, 2002.
DOI : 10.1023/A:1009255012328

B. B. Benson, D. Jr, and . Krause, The concentration and isotopic fractionation of oxygen dissolved in freshwater and seawater in equilibrium with the atmosphere1, Limnology and Oceanography, vol.29, issue.3, pp.620-632, 1984.
DOI : 10.4319/lo.1984.29.3.0620

C. M. Bethke, Geochemical Reaction Modeling, 1996.

J. M. Bigham and D. K. Nordstrom, Iron and aluminium hydrosulfates from acid sulfate waters. Reviews in mineralogy and geochemistry, pp.351-403, 2000.

J. M. Bigham, U. Schwertmann, L. Carlson, and E. Murad, A poorly crystallized oxyhydroxysulfate of iron formed by bacterial oxidation of Fe(II) in acid mine waters, Geochimica et Cosmochimica Acta, vol.54, issue.10, pp.2743-2758, 1990.
DOI : 10.1016/0016-7037(90)90009-A

J. M. Bigham, U. Schwertmann, and G. Pfab, Influence of pH on mineral speciation in a bioreactor simulating acid mine drainage, Applied Geochemistry, vol.11, issue.6, pp.845-849, 1996.
DOI : 10.1016/S0883-2927(96)00052-2

J. M. Bigham, U. Schwertmann, S. J. Traina, R. Winland, and M. Wolf, Schwertmannite and the chemical modeling of iron in acid sulfate waters, Geochimica et Cosmochimica Acta, vol.60, issue.12, pp.2111-2121, 1996.
DOI : 10.1016/0016-7037(96)00091-9

J. S. Blum, A. B. Bindi, J. Buzzelli, J. F. Stolz, and S. Oremland, Bacillus arsenicoselenatis , sp. nov., and Bacillus selenitireducens , sp. nov.: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic, Archives of Microbiology, vol.171, issue.1, pp.19-30, 1998.
DOI : 10.1007/s002030050673

H. Bolton, D. C. Girvin, A. E. Plymale, S. Harvey, and D. J. Workman, Degradation of metal-nitrilotriacetate complexes by chelatobacter heintzii

S. Bonneville, Kinetics of microbial Fe(III) oxyhydroxide reduction : The role of mineral properties, 2005.

R. C. Borden and P. B. Bedient, Transport of dissolved hydrocarbons influenced by oxygen-limited biodegradation: 1. Theoretical development, Water Resources Research, vol.10, issue.13, pp.1973-1982, 1986.
DOI : 10.1029/WR022i013p01973

P. M. Borer, B. Sulzberger, P. Reichard, and S. M. Kraemer, Effect of siderophores on the light-induced dissolution of colloidal iron(III) (hydr)oxides, Marine Chemistry, vol.93, issue.2-4, pp.179-193, 2005.
DOI : 10.1016/j.marchem.2004.08.006

N. Bousserrhine, Etude des paramètres de la réduction bactérienne du fer et applicationàapplication`applicationà la déferrification de minéraux industriels, 1995.

N. Bousserrhine, U. G. Gasser, E. Jeanroy, and J. Berthelin, Bacterial and Chemical Reductive Dissolution of Mn-, Co-, Cr-, and Al-Substituted Goethites, Geomicrobiology Journal, vol.16, issue.3, pp.245-258, 1999.
DOI : 10.1080/014904599270622

G. E. Briggs and J. B. Haldane, A Note on the Kinetics of Enzyme Action, Biochemical Journal, vol.19, issue.2, pp.338-339, 1925.
DOI : 10.1042/bj0190338

S. L. Bromfield, Reduction of Ferric Compounds by Soil Bacteria, Journal of General Microbiology, vol.11, issue.1, pp.1-6, 1954.
DOI : 10.1099/00221287-11-1-1

A. Brun and P. Engesgaard, Modelling of transport and biogeochemical processes in pollution plumes: literature review and model development, Journal of Hydrology, vol.256, issue.3-4, pp.211-227, 2002.
DOI : 10.1016/S0022-1694(01)00547-9

A. Brun, P. Engesgaard, T. H. Christensen, and D. Rosbjerg, Modelling of transport and biogeochemical processes in pollution plumes: Vejen landfill, Denmark, Journal of Hydrology, vol.256, issue.3-4, pp.228-247, 2002.
DOI : 10.1016/S0022-1694(01)00549-2

O. Bruneel, ContributionàContribution`Contributionà l'´ etude des mécanismes couplés géochimies et bactériologiques de transfert de la pollutionminì ere sur le site deCarnouì es (Gard), 2004.

O. Bruneel, R. Duran, C. Casiot, F. Elbaz-poulichet, and J. Personné, Diversity of Microorganisms in Fe-As-Rich Acid Mine Drainage Waters of Carnoules, France, Applied and Environmental Microbiology, vol.72, issue.1, pp.551-556, 2006.
DOI : 10.1128/AEM.72.1.551-556.2006

F. Caccavo, R. P. Blakemore, and D. R. Lovely, A hydrogen-oxidizing, Fe(III)reducing microorganism from the great bay estuary, Applied and Environmental Microbiology, issue.10, pp.583211-3216, 1992.

S. R. Caplan and A. Essig, Bioenergetics and linear nonequilibrium thermodynamics : the steady state, 1977.
DOI : 10.4159/harvard.9780674732063

L. Carlson, J. M. Bigham, U. Schwertmann, A. Kyek, and F. Wagner, Scavenging of As from Acid Mine Drainage by Schwertmannite and Ferrihydrite:?? A Comparison with Synthetic Analogues, Environmental Science & Technology, vol.36, issue.8, pp.1712-1719, 2002.
DOI : 10.1021/es0110271

C. Casiot, O. Bruneel, J. Personne, M. Leblanc, and F. Elbaz-poulichet, Arsenic oxidation and bioaccumulation by the acidophilic protozoan, Euglena mutabilis, in acid mine drainage (Carnoul??s, France), Science of The Total Environment, vol.320, issue.2-3, pp.259-267, 2004.
DOI : 10.1016/j.scitotenv.2003.08.004

C. Casiot, S. Lebrun, G. Morin, O. Bruneel, J. C. Personné et al., Sorption and redox processes controlling arsenic fate and transport in a stream impacted by acid mine drainage, Science of The Total Environment, vol.347, issue.1-3, pp.122-152, 2005.
DOI : 10.1016/j.scitotenv.2004.12.039
URL : https://hal.archives-ouvertes.fr/hal-00020206

C. Casiot, G. Morin, F. Juillot, O. Bruneel, J. Personne et al., Bacterial immobilization and oxidation of arsenic in acid mine drainage (Carnoul??s creek, France), Water Research, vol.37, issue.12, pp.2929-2936, 2003.
DOI : 10.1016/S0043-1354(03)00080-0

F. H. Chapelle, Ground-Water microbiology and geochemistry, 2001.

A. Chilakapati, S. Yabusaki, J. Szecsody, and W. Macevoy, Groundwater flow, multicomponent transport and biogeochemistry: development and application of a coupled process model, Journal of Contaminant Hydrology, vol.43, issue.3-4, pp.303-325, 2000.
DOI : 10.1016/S0169-7722(99)00107-2

N. Chilakapati, RAFT a simulator for reactive flow and transport of groundwater contaminants, 1995.
DOI : 10.2172/527466

S. E. Childers and D. R. Lovely, Differences in Fe(III) reduction in the hyperthermophilic archaeon, Pyrobacterium islandicum, versus mesophilic Fe(III)reducing bacteria, FEMS Microbiology Letters, pp.253-258, 2001.

T. H. Christensen, P. Kjeldsen, P. L. Bjerg, D. L. Jensen, J. B. Christensen et al., Biogeochemistry of landfill leachate plumes, Applied Geochemistry, vol.16, issue.7-8, pp.659-718, 2001.
DOI : 10.1016/S0883-2927(00)00082-2

V. G. Chukhlantsev, The solubility products of a number of arsenates, Journal of Analytical chemistry, vol.11, pp.565-571, 1956.

R. M. Cornell and U. Schwertmann, The iron oxides, 2003.
DOI : 10.1002/3527602097

G. P. Curtis, Comparison of approaches for simulating reactive solute transport involving organic degradation reactions by multiple terminal electron acceptors, Computers & Geosciences, vol.29, issue.3, pp.319-329, 2003.
DOI : 10.1016/S0098-3004(03)00008-6

A. W. Dale, P. Regnier, and P. Van-cappellen, Bioenergetic Controls on Anaerobic Oxidation of Methane (AOM) in Coastal Marine Sediments: A Theoretical Analysis, American Journal of Science, vol.306, issue.4, pp.246-294, 2006.
DOI : 10.2475/ajs.306.4.246

F. Dassonville and P. Renault, Interactions between microbial processes and geochemical transformations under anaerobic conditions: a review, Agronomie, vol.22, issue.1, pp.51-68, 2002.
DOI : 10.1051/agro:2001001

G. De-marsily, Quantitative hydrogeology, 1981.

S. Dixit and J. G. Hering, Comparison of Arsenic(V) and Arsenic(III) Sorption onto Iron Oxide Minerals:?? Implications for Arsenic Mobility, Environmental Science & Technology, vol.37, issue.18, pp.4182-4189, 2003.
DOI : 10.1021/es030309t

M. P. Dove and J. D. Rimstidt, The solubility of scorodite, American mineralogist, vol.70, pp.838-844, 1985.

K. Duquesne, S. Lebrun, C. Casiot, O. Bruneel, J. Personne et al., Immobilization of Arsenite and Ferric Iron by Acidithiobacillus ferrooxidans and Its Relevance to Acid Mine Drainage, Applied and Environmental Microbiology, vol.69, issue.10, pp.696165-6173, 2003.
DOI : 10.1128/AEM.69.10.6165-6173.2003

D. A. Dzombak and F. M. , Surface Complexation modeling : Hydrous ferric oxyde, 1990.

H. I. Essaid, B. A. Bekins, E. M. Godsy, E. Warren, M. J. Bardecker et al., Simulation of aerobic and anaerobic biodegradation processes at a crude oil spill site, Water Resources Research, vol.30, issue.8, pp.313309-3327, 1995.
DOI : 10.1029/95WR02567

S. Even, Modélisation d'unécoulementunécoulement fluvial : La Seine. Le modèle ProSe, 1995.

Y. Fang, Reactive Chemical transport under multiphase system, 2003.
DOI : 10.1016/s0167-5648(02)80123-x

Y. Fang, G. T. Yeh, and W. D. Burgos, A general paradigm to model reactionbased biogeochemical processes in batch systems, Water Resources Research, vol.39, issue.4, 2003.

F. G. Ferris, K. Tazaki, and W. S. Fyte, Iron oxides in acid mine drainage environments and their association with bacteria, Chemical Geology, vol.74, issue.3-4, pp.321-330, 1989.
DOI : 10.1016/0009-2541(89)90041-7

T. A. Fowler, P. R. Holmes, and F. K. , On the kinetics and mechanism of the dissolution of pyrite in the presence of Thiobacillus ferrooxidans, Hydrometallurgy, vol.59, issue.2-3, pp.1987-2993, 1999.
DOI : 10.1016/S0304-386X(00)00172-9

A. G. Fredrickson, Behavior of Mixed Cultures of Microorganisms, Annual Review of Microbiology, vol.31, issue.1, pp.63-87, 1977.
DOI : 10.1146/annurev.mi.31.100177.000431

K. Fukushi, T. Sato, and N. Yanase, Solid-Solution Reactions in As(V) Sorption by Schwertmannite, Environmental Science & Technology, vol.37, issue.16, pp.3581-3586, 2003.
DOI : 10.1021/es026427i

K. Fukushi, T. Sato, N. Yanase, J. Minato, and H. Yamada, Arsenate sorption on schwertmannite, American Mineralogist, vol.89, issue.11-12, pp.1728-1734, 2004.
DOI : 10.2138/am-2004-11-1219

C. C. Fuller, J. A. Davis, and G. A. Waychunas, Surface chemistry of ferrihydrite: Part 2. Kinetics of arsenate adsorption and coprecipitation, Geochimica et Cosmochimica Acta, vol.57, issue.10, pp.2271-2282, 1993.
DOI : 10.1016/0016-7037(93)90568-H

F. Garrido, A. Burnol, M. C. Dictor, G. Morin, and P. Baranger, Bacterial co-reduction of As(V) and hydrous Fe(III) oxide : experiments and numerical simulation, 14th Annual Goldschmidt conference, pp.6-11, 2004.

K. Goh and T. Lim, Arsenic fractionation in a fine soil fraction and influence of various anions on its mobility in the subsurface environment, Applied Geochemistry, vol.20, issue.2, pp.229-239, 2005.
DOI : 10.1016/j.apgeochem.2004.08.004

J. P. Gwo, E. F. Azevedo, H. Frenzel, M. Mayes, G. T. Yeh et al., HBGC123D: a high-performance computer model of coupled hydrogeological and biogeochemical processes, Computers & Geosciences, vol.27, issue.10, pp.1231-1242, 2001.
DOI : 10.1016/S0098-3004(01)00027-9

P. I. Harvey and F. K. , Growth of thiobacillus ferrooxidans : a novel experimental design for batch growth and bacterial leaching studies, Applied and Environmental Microbiology, vol.63, issue.7, pp.2586-2592, 1997.

Q. H. He, G. G. Leppard, C. R. Paige, and W. J. Snodgrass, Transmission electron microscopy of a phosphate effect on the colloid structure of iron hydroxide, Water Research, vol.30, issue.6, pp.1345-1352, 1996.
DOI : 10.1016/0043-1354(95)00305-3

G. Heron, C. Crouzet, A. C. Bourg, and T. H. Christensen, Speciation of Fe(II) and Fe(III) in Contaminated Aquifer Sediments Using Chemical Extraction Techniques, Environmental Science & Technology, vol.28, issue.9, pp.1698-1705, 1994.
DOI : 10.1021/es00058a023

L. E. Hersman, J. H. Forsythe, L. O. Ticknor, and P. A. Maurice, Growth of Pseudomonas mendocina on Fe(III) (Hydr)Oxides, Applied and Environmental Microbiology, vol.67, issue.10, pp.4448-4453, 2001.
DOI : 10.1128/AEM.67.10.4448-4453.2001

T. L. Hill, Free energy transduction in biology : the steady-state kinetics and thermodynamic formalism, 1977.

P. C. Houtsma, B. J. Kusters, J. C. De-wit, F. M. Rombouts, and M. H. Zwietering, Modelling growth rates of Listeria innocua as a function of lactate concentration, International Journal of Food Microbiology, vol.24, issue.1-2, pp.113-123, 1994.
DOI : 10.1016/0168-1605(94)90111-2

K. S. Hunter, Y. Wang, and P. Van-cappellen, Kinetic modeling of microbially-driven redox chemistry of subsurface environments: coupling transport, microbial metabolism and geochemistry, Journal of Hydrology, vol.209, issue.1-4, pp.53-80, 1998.
DOI : 10.1016/S0022-1694(98)00157-7

J. Islam and N. Singhal, A one-dimensional reactive multi-component landfill leachate transport model. Environmental Modelling & Software, pp.531-543, 2002.

Q. Jin and C. M. Bethke, Kinetics of Electron Transfer through the Respiratory Chain, Biophysical Journal, vol.83, issue.4, pp.1797-1808, 2002.
DOI : 10.1016/S0006-3495(02)73945-3

Q. Jin and C. M. Bethke, A New Rate Law Describing Microbial Respiration, Applied and Environmental Microbiology, vol.69, issue.4, pp.2340-2348, 2003.
DOI : 10.1128/AEM.69.4.2340-2348.2003

Q. Jin and C. M. Bethke, Predicting the rate of microbial respiration in geochemical environments, Geochimica et Cosmochimica Acta, vol.69, issue.5, pp.1133-1143, 2005.
DOI : 10.1016/j.gca.2004.08.010

A. Kappler, M. Benz, B. Schink, and A. Brune, Electron shuttling via humic acids in microbial iron(III) reduction in a freshwater sediment, FEMS Microbiology Ecology, vol.47, issue.1, pp.85-92, 2004.
DOI : 10.1016/S0168-6496(03)00245-9

D. G. Karamanev, Model of the biofilm structure of Thiobacillus ferrooxidans, Journal of Biotechnology, vol.20, issue.1, pp.51-64, 1991.
DOI : 10.1016/0168-1656(91)90034-S

A. Keshtkar, H. Ghaforian, G. Abolhamd, and B. Meyssami, Dynamic simulation of cyclic batch anaerobic digestion of cattle manure, Bioresource Technology, vol.80, issue.1, pp.9-17, 2001.
DOI : 10.1016/S0960-8524(01)00071-2

A. Keshtkar, B. Meyssami, G. Abolhamd, H. Ghaforian, and M. K. Asadi, Mathematical modeling of non-ideal mixing continuous flow reactors for anaerobic digestion of cattle manure, Bioresource Technology, vol.87, issue.1, pp.113-124, 2003.
DOI : 10.1016/S0960-8524(02)00104-9

M. J. Kim, Separation of Inorganic Arsenic Species in Groundwater Using Ion Exchange Method, Bulletin of Environmental Contamination and Toxicology, vol.67, issue.1, pp.46-51, 2001.
DOI : 10.1007/s001280089

W. Kinzerbach, W. Schafer, and J. Herzer, Numerical modeling of natural and enhanced denitrification processes in aquifers, Water Resources Research, vol.149, issue.4, pp.1123-1135, 1991.
DOI : 10.1029/91WR00474

C. S. Kirby, J. A. Elder, and . Brady, Field determination of Fe2+ oxidation rates in acid mine drainage using a continuously-stirred tank reactor, Applied Geochemistry, vol.13, issue.4, pp.509-520, 1998.
DOI : 10.1016/S0883-2927(97)00077-2

K. L. Straub and B. Schink, Evaluation of electron-shuttling compounds in microbial ferric iron reduction, FEMS Microbiology Letters, vol.220, issue.2, pp.229-233, 2003.
DOI : 10.1016/S0378-1097(03)00130-7

. Kouadio-koffi, ContributionàContribution`Contributionà l'´ etude des processus couplés hydrogéochimiques dans les stocks de dechets miniers : Le cas du site deCarnouì es

S. M. Kraemer, Iron oxide dissolution and solubility in the presence of siderophores, Aquatic Sciences - Research Across Boundaries, vol.66, issue.1, pp.3-18, 2004.
DOI : 10.1007/s00027-003-0690-5

S. M. Kraemer, S. F. Cheah, R. Zapf, J. Xu, K. N. Raymond et al., Effect of hydroxamate siderophores on Fe release and Pb(II) adsorption by goethite, Geochimica et Cosmochimica Acta, vol.63, issue.19-20, pp.3003-3008, 1999.
DOI : 10.1016/S0016-7037(99)00227-6

E. Krause and V. A. , The solubility of scorodite, FeAsO 4 ·2H 2 O : New data and further discussion, American mineralogist, vol.73, pp.850-854, 1988.

J. Kreft, C. Picioreanu, J. W. Wimpenny, and M. C. Van-loosdrecht, Individual-based modelling of biofilms, Microbiology, vol.147, issue.11, pp.1897-2912, 2001.
DOI : 10.1099/00221287-147-11-2897

V. Lagneau, R2d2 -reactive transport and waterflow on an odd dimension 2 grid -notice technique et vérification, 2003.

C. Lancelot and S. Mathot, Dynamics of a Phaeocystis-dominated spring bloom in Belgian coastal waters. I. Phytoplanktonic activities and related parameters, Marine Ecology Progress Series, vol.37, pp.239-248, 1987.
DOI : 10.3354/meps037239

A. C. Lasaga, Kinetic theory in earth sciences, 1998.
DOI : 10.1515/9781400864874

A. M. Laverman, J. S. Blum, J. K. Schaefer, E. Phillips, D. R. Lovely et al., Growth of strain SES-3 with arsenate and other diverse electron acceptors, Applied and Environmental Microbiology, issue.10, pp.613556-3561, 1995.

M. Leblanc, B. Achard, D. B. Othman, and J. M. Luck, Accumulation of arsenic from acidic mine waters by ferruginous bacterial accretions (stromatolites), Applied Geochemistry, vol.11, issue.4
DOI : 10.1016/0883-2927(96)00010-8

M. Leblanc, C. Casiot, F. Elbaz-poulichet, and C. Personné, Arsenic removal by oxidizing bacteria in a heavily arsenic-contaminated acid mine drainage system Carnouì es, France), Mine water Hydrogeology and Geochemistry, pp.267-274, 2002.

F. Lei, M. Rotboll, and S. B. Jorgensen, A biochemically structured model for Saccharomyces cerevisiae, Journal of Biotechnology, vol.88, issue.3, pp.205-221, 2001.
DOI : 10.1016/S0168-1656(01)00269-3

C. W. Lindenmeier, M. J. Lindberg, K. N. Geiszler, R. J. Serne, R. E. Clayton et al., Characterization of vadose zone sediment : RCRA borehole 299-E33-338 located near the B-BX-BY waste management area, 2003.

C. Liu, S. Kota, J. M. Zachara, J. K. Fredrickson, and C. K. Brinkman, Kinetic Analysis of the Bacterial Reduction of Goethite, Environmental Science & Technology, vol.35, issue.12, pp.2482-2490, 2001.
DOI : 10.1021/es001956c

C. Liu, J. M. Zachara, Y. A. Gorby, J. E. Szecsody, and C. F. Brown, Strain CN32, Environmental Science & Technology, vol.35, issue.7, pp.1385-1393, 2001.
DOI : 10.1021/es0015139

M. Loan, J. M. Cowley, R. Hart, and G. M. Parkinson, Evidence on the structure of synthetic schwertmannite, American Mineralogist, vol.89, issue.11-12, pp.1735-1742, 2004.
DOI : 10.2138/am-2004-11-1220

D. J. Lonergan, H. L. Jenter, J. D. Coates, E. J. Phillips, T. M. Schmidt et al., Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria., Journal of Bacteriology, vol.178, issue.8, pp.1781402-2408, 1996.
DOI : 10.1128/jb.178.8.2402-2408.1996

D. R. Lovely and J. D. Coates, Novel forms of anaerobic respiration of environmental relevance, Current Opinion in Microbiology, vol.3, issue.3, pp.252-256, 2000.
DOI : 10.1016/S1369-5274(00)00085-0

D. R. Lovely and E. J. Philips, Rapid assay for microbially reducible ferric iron in aquatic sediments, Applied and Environmental Microbiology, issue.12, p.53, 1987.

D. R. Lovely, E. J. Phillips, and D. J. Lonergan, Enzymic versus nonenzymic mechanisms for iron(III) reduction in aquatic sediments, Environmental Science & Technology, vol.25, issue.6, pp.1062-1067, 1991.
DOI : 10.1021/es00018a007

J. H. Luong, Generalization of monod kinetics for analysis of growth data with substrate inhibition, Biotechnology and Bioengineering, vol.26, issue.2, pp.242-248, 1987.
DOI : 10.1002/bit.260290215

M. Z. Makhmetov, A. K. Sagadieva, and V. I. Chuprakov, Solubility of iron arsenate, Journal of Applied Chemistry, vol.54, pp.823-824, 1981.

P. K. Malakar, D. E. Martens, M. H. Zwietering, C. Béal, and K. Van-'t-riet, Modelling the interactions between Lactobacillus curvatus and Enterobacter cloacae, International Journal of Food Microbiology, vol.51, issue.1, pp.67-79, 1999.
DOI : 10.1016/S0168-1605(99)00096-3

D. E. Martens, C. Béal, P. Malakar, M. H. Zwietering, and K. Van-'t-riet, Modelling the interactions between Lactobacillus curvatus and Enterobacter cloacae, International Journal of Food Microbiology, vol.51, issue.1, pp.53-65, 1999.
DOI : 10.1016/S0168-1605(99)00095-1

K. U. Mayer, S. G. Benner, E. O. Frind, S. F. Thornton, and D. N. Lerner, Reactive transport modeling of processes controlling the distribution and natural attenuation of phenolic compounds in a deep sandstone aquifer, Journal of Contaminant Hydrology, vol.53, issue.3-4, pp.341-368, 2001.
DOI : 10.1016/S0169-7722(01)00173-5

M. A. Klug and . Velbel, Temporal variations in parameters reflecting terminalelectron-accepting processes in an aquifer contaminated with waste fuel and chlorinated solvents, Chemical Geology, vol.169, pp.471-485, 2000.

W. W. Mcnab and T. N. Narasimhan, Modeling reactive transport of organic compounds in groundwater using a partial redox disequilibrium approach, Water Resources Research, vol.24, issue.43, pp.2619-2635, 1994.
DOI : 10.1029/94WR01305

L. Michaelis and M. L. Menten, Die kinetik der invertinwirkung, Biochemische Zeitschrift, vol.49, pp.333-369, 1931.

C. F. Mignone and E. R. Donati, ATP requirements for growth and maintenance of iron-oxidizing bacteria, Biochemical Engineering Journal, vol.18, issue.3, pp.211-216, 2004.
DOI : 10.1016/j.bej.2003.08.010

J. Monod, Recherches sur la croissance des cultures bactériennes. Hermann and Cie, 1942.

G. Morin, F. Juillot, C. Casiot, O. Bruneel, J. C. Personne et al., Bacterial Formation of Tooeleite and Mixed Arsenic(III) or Arsenic(V)???Iron(III) Gels in the Carnoul??s Acid Mine Drainage, France. A XANES, XRD, and SEM Study, Environmental Science & Technology, vol.37, issue.9, pp.1705-1712, 2003.
DOI : 10.1021/es025688p

A. Moser, Kinetics of batch fermentations, In Biotechnology, pp.243-283

M. Nemati, S. T. Harrison, G. S. Hansford, and C. Webb, Biological oxidation of ferrous sulphate by Thiobacillus ferrooxidans: a review on the kinetic aspects, Biochemical Engineering Journal, vol.1, issue.3, pp.171-190, 1998.
DOI : 10.1016/S1369-703X(98)00006-0

T. Nishimura and K. Tozawa, On the solubility products of ferric, calcium and magnesium arsenates. Bulletin of the research Institute of Mineral Dressing and Metallurgy, pp.20-26, 1978.

D. K. Nordstrom, E. A. Jenne, and J. W. Ball, Redox equilibria of iron in acid mine waters., chapter Chemical modeling in aqueous systems, pp.51-79, 1979.

B. Nowack, Environmental Chemistry of Aminopolycarboxylate Chelating Agents, Environmental Science & Technology, vol.36, issue.19, pp.4004-4016, 2002.
DOI : 10.1021/es025683s

D. J. O-'connor and W. E. Dobbins, Mechanisms of reaeration in natural streams, ASCE Transactions, vol.123, pp.641-666, 1958.

G. Ona-nguema, G. Morin, F. Juillot, G. Calas, G. E. Brown et al., EXAFS Analysis of Arsenite Adsorption onto Two-Line Ferrihydrite, Hematite, Goethite, and Lepidocrocite, Environmental Science & Technology, vol.39, issue.23, pp.9147-9155, 2005.
DOI : 10.1021/es050889p
URL : https://hal.archives-ouvertes.fr/hal-00020369

N. S. Panikov, Microbial growth kinetics, 1995.

N. S. Panikov, Understanding and prediction of soil microbial community dynamics under global change, Applied Soil Ecology, vol.11, issue.2-3, pp.161-176, 1999.
DOI : 10.1016/S0929-1393(98)00143-7

J. Pelmont, Bactéries et environnement. Adaptations physiologiques, 1993.

T. Platt, C. L. Gallegos, and W. G. Harrison, Photo-inhibition of photosynthesis in natural assemblages of marine phytoplankton, Journal of Marine Research, vol.38, pp.687-701, 1980.

D. Postma and R. Jakobsen, Redox zonation: Equilibrium constraints on the Fe(III)/SO4-reduction interface, Geochimica et Cosmochimica Acta, vol.60, issue.17, pp.603169-3175, 1996.
DOI : 10.1016/0016-7037(96)00156-1

K. P. Raven, A. Jain, and R. H. Loeppert, Arsenite and Arsenate Adsorption on Ferrihydrite:?? Kinetics, Equilibrium, and Adsorption Envelopes, Environmental Science & Technology, vol.32, issue.3, pp.344-349, 1998.
DOI : 10.1021/es970421p

S. Regenspurg and S. Peiffer, Arsenate and chromate incorporation in schwertmannite, Applied Geochemistry, vol.20, issue.6, pp.1226-1239, 2005.
DOI : 10.1016/j.apgeochem.2004.12.002

P. Regnier, J. P. O-'kane, C. I. Steefel, and J. P. Vanderborght, Modeling complex multi-component reactive-transport systems: towards a simulation environment based on the concept of a Knowledge Base, Applied Mathematical Modelling, vol.26, issue.9, pp.913-927, 2002.
DOI : 10.1016/S0307-904X(02)00047-1

B. E. Rittman and J. M. Vanbriesen, Microbiological proceses in reactive modeling, Reactive Transport in Porous media, pp.311-334, 1996.

R. G. Robins, Solubility and stability of scorodite, FeAsO 4 -2H 2 O : Discussion, American Mineralogist, vol.75, issue.78, pp.842-844, 1987.

E. E. Roden, Analysis of long-term bacterial vs. chemical Fe(III) oxide reduction kinetics, Geochimica et Cosmochimica Acta, vol.68, issue.15, pp.683205-3216, 2004.
DOI : 10.1016/j.gca.2004.03.028

E. E. Roden and M. M. Urrutia, Influence of Biogenic Fe(II) on Bacterial Crystalline Fe(III) Oxide Reduction, Geomicrobiology Journal, vol.59, issue.2, pp.209-251, 2002.
DOI : 10.1016/S0016-7037(05)80015-8

K. M. Salvage and G. T. Yeh, Development and application of a numerical model of kinetic and equilibrium microbiological and geochemical reactions (BIOKEMOD), Journal of Hydrology, vol.209, issue.1-4, pp.27-52, 1998.
DOI : 10.1016/S0022-1694(98)00120-6

A. Schnurer, B. H. Svensson, and B. Schink, Enzyme activities in and energetics of acetate metabolism by the mesophilic syntrophically acetate-oxidizing anaerobe Clostridium ultunense, FEMS Microbiology Letters, vol.154, issue.2, pp.331-336, 1997.
DOI : 10.1111/j.1574-6968.1997.tb12664.x

S. Seeliger, P. H. Janssen, and B. Schink, Energetics and kinetics of lactate fermentation to acetate and propionate via methylmalonyl-CoA or acrylyl-CoA, FEMS Microbiology Letters, vol.211, issue.1, pp.65-70, 2002.
DOI : 10.1111/j.1574-6968.2002.tb11204.x

M. P. Silverman and H. L. Ehrlich, Microbial Formation and Degradation of Minerals, Advances in Applied Microbiology, vol.6, pp.153-206, 1964.
DOI : 10.1016/S0065-2164(08)70626-9

P. C. Singer and W. Stumm, Acidic Mine Drainage: The Rate-Determining Step, Science, vol.167, issue.3921, pp.1121-1123, 1970.
DOI : 10.1126/science.167.3921.1121

P. L. Smedley and D. G. Kinniburgh, A review of the source, behaviour and distribution of arsenic in natural waters, Applied Geochemistry, vol.17, issue.5, pp.517-568, 2002.
DOI : 10.1016/S0883-2927(02)00018-5

M. J. Spence, S. H. Bottrell, J. J. Higgo, I. Harrison, and A. E. Fallick, Denitrification and phenol degradation in a contaminated aquifer, Journal of Contaminant Hydrology, vol.53, issue.3-4, pp.305-318, 2001.
DOI : 10.1016/S0169-7722(01)00171-1

C. I. Steefel and P. Van-cappellen, Reactive transport modeling of natural systems, Journal of hydrology, vol.209, pp.1-7, 1998.

W. Stumm and J. J. Morgan, Aquatic chemistry : an introduction emphasizing chemical equilibria in natural waters, 1981.

I. Suzuki, H. M. Lizama, and P. D. Tackaberry, Competitive inhibition of ferrous iron oxidation by thiobacillus ferrooxidans by increasing concentrations of cells, Applied and Environmental Microbiology, vol.55, issue.5, pp.1117-1121, 1989.

C. L. Tebes-stevens, A. J. Valocchi, J. M. Vanbriesen, and B. E. Rittmann, Multicomponent transport with coupled geochemical and microbiological reactions: model description and example simulations, Journal of Hydrology, vol.209, issue.1-4, pp.8-26, 1998.
DOI : 10.1016/S0022-1694(98)00104-8

R. K. Thauer, K. Jungermann, and K. Decker, Energy conservation in chemotrophic anaerobic bacteria, Bacteriological Reviews, vol.41, issue.1, pp.100-180, 1977.

L. Thibodeaux, M. Poulin, and S. Even, A model for enhanced aeration of streams by motor vessels with application to the Seine river, Journal of Hazardous Materials, vol.37, issue.3, pp.459-473, 1994.
DOI : 10.1016/0304-3894(93)E0101-7

S. F. Thornton, D. N. Lerner, and S. A. Banwart, Assessing the natural attenuation of organic contaminants in aquifers using plume-scale electron and carbon balances: model development with analysis of uncertainty and parameter sensitivity, Journal of Contaminant Hydrology, vol.53, issue.3-4, pp.199-232, 2001.
DOI : 10.1016/S0169-7722(01)00167-X

S. F. Thornton, S. Quigley, M. J. Spence, S. A. Banwart, S. Bottrell et al., Processes controlling the distribution and natural attenuation of dissolved phenolic compounds in a deep sandstone aquifer, Journal of Contaminant Hydrology, vol.53, issue.3-4, pp.233-267, 2001.
DOI : 10.1016/S0169-7722(01)00168-1

M. Thullner, P. Van-cappellen, and P. Regnier, Modeling the impact of microbial activity on redox dynamics in porous media, Geochimica et Cosmochimica Acta, vol.69, issue.21, pp.695005-5019, 2005.
DOI : 10.1016/j.gca.2005.04.026

J. Tonnelat, Thermodynamique et biologie. 1, Entropie, désordre et compléxité, Maloine-Doin, vol.1, 1978.

P. M. Van-bodegom and J. C. Scholten, Microbial processes of CH 4 production in a rice paddy soil : Model and experimental validation, Geochim. Cosmochim. Acta, issue.13, pp.652055-2066, 2001.

P. M. Van-bodegom and A. J. Stams, Effects of alternative electron acceptors and temperature on methanogenesis in rice paddy soils, Chemosphere, vol.39, issue.2, pp.167-182, 1999.
DOI : 10.1016/S0045-6535(99)00101-0

J. Van-der-lee and C. Lomenech, Summary, Radiochimica Acta, vol.92, issue.9-11, 2004.
DOI : 10.1524/ract.92.9.811.54998

M. Vargas, K. Kashefi, E. L. Blunt-harris, and D. R. Lovely, Microbiological evidence for Fe(III) reduction on early earth, Nature, vol.395, p.65, 1998.

P. F. Verhulst, Notice sur la loi que la population poursuit dans son accroissement . Correspondance mathématique et physique, pp.113-121, 1838.

E. Vircikova, J. Molnar, P. Lech, and E. Reitznerova, Solubilities of amorphous Fe???As precipitates, Hydrometallurgy, vol.38, issue.2, pp.111-123, 1995.
DOI : 10.1016/0304-386X(94)00072-B

Y. Wang and H. S. Papenguth, Kinetic modeling of microbially-driven redox chemistry of radionuclides in subsurface environments: coupling transport, microbial metabolism and geochemistry, Journal of Contaminant Hydrology, vol.47, issue.2-4, pp.297-309, 2001.
DOI : 10.1016/S0169-7722(00)00158-3

G. A. Waychunas, C. C. Fuller, B. A. Rea, and J. A. Davis, Wide angle X-ray scattering (WAXS) study of ???two-line??? ferrihydrite structure: Effect of arsenate sorption and counterion variation and comparison with EXAFS results, Geochimica et Cosmochimica Acta, vol.60, issue.10, pp.1765-1781, 1995.
DOI : 10.1016/0016-7037(96)89830-9

N. J. Welham, K. A. Malatt, and S. Vukcevic, The stability of iron phases presently used for disposal from metallurgical systems???A review, Minerals Engineering, vol.13, issue.8-9, pp.8-9911, 2000.
DOI : 10.1016/S0892-6875(00)00078-9

K. S. Whiting, The thermodynamics and the geochemistry of arsenic, with application to subsurface waters at the sharon steel superfund site at midvale, utah. Master's thesis, Colorado School of Mines, 1992.

J. A. Wilkie and J. G. Hering, Adsorption of arsenic onto hydrous ferric oxide: effects of adsorbate/adsorbent ratios and co-occurring solutes, Colloids and Surfaces A: Physicochemical and Engineering Aspects, vol.107, pp.97-110, 1996.
DOI : 10.1016/0927-7757(95)03368-8

G. M. Williams, R. W. Pickup, S. F. Thornton, D. N. Lerner, H. E. Mallinson et al., Biogeochemical characterisation of a coal tar distillate plume, Journal of Contaminant Hydrology, vol.53, issue.3-4, pp.175-197, 2001.
DOI : 10.1016/S0169-7722(01)00166-8

J. Y. Yu, B. Heo, I. K. Choi, J. P. Cho, and H. W. Chang, Apparent solubilities of schwertmannite and ferrihydrite in natural stream waters polluted by mine drainage, Geochimica et Cosmochimica Acta, vol.63, issue.19-20, pp.633407-3416, 1999.
DOI : 10.1016/S0016-7037(99)00261-6

W. H. Yu, C. Harvey, and C. F. Harvey, Arsenic in groundwater in Bangladesh: A geostatistical and epidemiological framework for evaluating health effects and potential remedies, Water Resources Research, vol.13, issue.9, p.1146, 2003.
DOI : 10.1029/2002WR001327

Y. Zhu and B. J. , The dissolution and solubility of scorodite, FeAsO 4 ·2H 2 O evaluation and simulation with PHREEQC2, Wiss.Mitt.Inst.fur Geologie, 2001.