W. Denk, J. Strickler, and W. Webb, Two-photon laser scanning fluorescence microscopy, Science, vol.248, issue.4951, pp.73-76, 1990.
DOI : 10.1126/science.2321027

W. R. Zipfel, R. M. Williams, and W. W. Webb, Nonlinear magic: multiphoton microscopy in the biosciences, Nature Biotechnology, vol.21, issue.11, pp.1369-77, 2003.
DOI : 10.1038/nbt899

P. N. Butcher and D. Cotter, The elements of nonlinear optics, 1990.
DOI : 10.1017/CBO9781139167994

M. Joffre, Optique non-linéaire en régimes continu et femtoseconde, 2010.

D. E. Spence, P. N. Kean, and W. Sibbett, 60-fsec pulse generation from a self-mode-locked Ti:sapphire laser, Optics Letters, vol.16, issue.1, p.42, 1991.
DOI : 10.1364/OL.16.000042

W. Mohler, A. C. Millard, and P. J. Campagnola, Second harmonic generation imaging of endogenous structural proteins, Methods, vol.29, issue.1, pp.97-109, 2003.
DOI : 10.1016/S1046-2023(02)00292-X

L. Moreaux, O. Sandre, and J. Mertz, Membrane imaging by second-harmonic generation microscopy, Journal of the Optical Society of America B, vol.17, issue.10, pp.1685-1694, 2000.
DOI : 10.1364/JOSAB.17.001685

D. Oron, D. Yelin, E. Tal, S. Raz, R. Fachima et al., Depth-resolved structural imaging by third-harmonic generation microscopy, Journal of Structural Biology, vol.147, issue.1, pp.3-11, 2004.
DOI : 10.1016/S1047-8477(03)00125-4

. Tsai, Higher harmonic generation microscopy for developmental biology, Journal of structural biology, vol.147, pp.19-30, 2004.

N. Olivier, M. A. Luengo-oroz, L. Duloquin, E. Faure, T. Savy et al., Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy, Science, vol.329, issue.5994, pp.967-71, 2010.
DOI : 10.1126/science.1189428
URL : https://hal.archives-ouvertes.fr/hal-00519834

Y. Wang, C. Lin, A. Nikolaenko, V. Raghunathan, and E. O. Potma, Fourwave mixing microscopy of nanostructures, Advances in Optics and Photonics, vol.3, issue.1, 2010.

P. Mahou, N. Olivier, G. Labroille, L. Duloquin, J. Sintes et al., Combined third-harmonic generation and four-wave mixing microscopy of tissues and embryos, Biomedical Optics Express, vol.2, issue.10, p.2837, 2011.
DOI : 10.1364/BOE.2.002837.m002
URL : https://hal.archives-ouvertes.fr/hal-00636949

J. Cheng and X. S. Xie, Coherent Anti-Stokes Raman Scattering Microscopy:?? Instrumentation, Theory, and Applications, The Journal of Physical Chemistry B, vol.108, issue.3, pp.827-840, 2004.
DOI : 10.1021/jp035693v

A. Volkmer, Vibrational imaging and microspectroscopies based on coherent anti-Stokes Raman scattering microscopy, Journal of Physics D: Applied Physics, vol.38, issue.5, pp.59-81, 2005.
DOI : 10.1088/0022-3727/38/5/R01

W. R. Zipfel, R. M. Williams, R. Christie, A. Y. Nikitin, B. T. Hyman et al., Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation, Proceedings of the National Academy of Sciences, vol.100, issue.12, pp.7075-80, 2003.
DOI : 10.1073/pnas.0832308100

D. Débarre, W. Supatto, A. Pena, A. Fabre, T. Tordjmann et al., Imaging lipid bodies in cells and tissues using third-harmonic generation microscopy, Nature Methods, vol.61, issue.1, p.47, 2006.
DOI : 10.1038/nmeth813

D. Meshulach and Y. Silberberg, Coherent quantum control of two-photon transitions by a femtosecond laser pulse, Nature, vol.396, pp.239-242, 1998.

N. Dudovich, D. Oron, and Y. Silberberg, Single-pulse coherently controlled nonlinear Raman spectroscopy and microscopy, Nature, vol.248, issue.6897, pp.512-516, 2002.
DOI : 10.1046/j.1365-2818.2000.00648.x

I. Pastirk, J. D. Cruz, K. Walowicz, V. Lozovoy, and M. Dantus, Selective two-photon microscopy with shaped femtosecond pulses, Optics Express, vol.11, issue.14, p.1695, 2003.
DOI : 10.1364/OE.11.001695.m004

M. Dantus and V. V. Lozovoy, Experimental Coherent Laser Control of Physicochemical Processes, Chemical Reviews, vol.104, issue.4, pp.1813-59, 2004.
DOI : 10.1021/cr020668r

J. P. Ogilvie, K. J. Kubarych, A. Alexandrou, and M. Joffre, Fourier transform measurement of two-photon excitation spectra: applications to microscopy and optimal control, Optics Letters, vol.30, issue.8, p.911, 2005.
DOI : 10.1364/OL.30.000911
URL : https://hal.archives-ouvertes.fr/hal-00016947

J. P. Ogilvie, D. Débarre, X. Solinas, J. Martin, E. Beaurepaire et al., Use of coherent control for selective two-photon fluorescence microscopy in live organisms, Optics Express, vol.14, issue.2, p.759, 2006.
DOI : 10.1364/OPEX.14.000759
URL : https://hal.archives-ouvertes.fr/hal-00018766

B. Lamine, C. Fabre, and N. Treps, Quantum Improvement of Time Transfer between Remote Clocks, Physical Review Letters, vol.101, issue.12, pp.1-4, 2008.
DOI : 10.1103/PhysRevLett.101.123601
URL : https://hal.archives-ouvertes.fr/hal-00270912

O. Pinel, Optique quantique multimode avec des peignes de fréquence, 2010.

J. Ye, Absolute measurement of a long, arbitrary distance to less than an optical fringe, Optics Letters, vol.29, issue.10, p.1153, 2004.
DOI : 10.1364/OL.29.001153

G. M. Harry, Advanced LIGO: the next generation of gravitational wave detectors, Classical and Quantum Gravity, vol.27, issue.8, p.84006, 2010.
DOI : 10.1088/0264-9381/27/8/084006

A. Monmayrant, S. Weber, and B. Chatel, A newcomer's guide to ultrashort pulse shaping and characterization, Journal of Physics B: Atomic, Molecular and Optical Physics, vol.43, issue.10, p.103001, 2010.
DOI : 10.1088/0953-4075/43/10/103001

E. Treacy, Optical pulse compression with diffraction gratings, IEEE Journal of Quantum Electronics, vol.5, issue.9, pp.454-458, 1969.
DOI : 10.1109/JQE.1969.1076303

F. Druon, M. Hanna, G. Lucas-leclin, Y. Zaouter, D. Papadopoulos et al., Simple and general method to calculate the dispersion properties of complex and aberrated stretchers-compressors, Journal of the Optical Society of America B, vol.25, issue.5, pp.754-762, 2008.
DOI : 10.1364/JOSAB.25.000754
URL : https://hal.archives-ouvertes.fr/hal-00533396

O. E. Martinez, 3000 times grating compressor with positive group velocity dispersion: Application to fiber compensation in 1.3-1.6 ??m region, IEEE Journal of Quantum Electronics, vol.23, issue.1, pp.59-64, 1987.
DOI : 10.1109/JQE.1987.1073201

D. Strickland and G. Mourou, Compression of amplified chirped optical pulses, Optics Communications, vol.56, issue.3, pp.219-221, 1985.
DOI : 10.1016/0030-4018(85)90120-8

R. L. Fork, O. E. Martinez, and J. P. Gordon, Negative dispersion using pairs of prisms, Optics Letters, vol.9, issue.5, pp.150-152, 1984.
DOI : 10.1364/OL.9.000150

O. E. Martinez and J. Gordon, Negative group-velocity dispersion using refraction, Journal of the Optical Society of America A, vol.1, issue.10, pp.1003-1006, 1984.
DOI : 10.1364/JOSAA.1.001003

R. Sherriff, Analytic expressions for group-delay dispersion and cubic dispersion in arbitrary prism sequences, Journal of the Optical Society of America B, vol.15, issue.3, pp.1224-1230, 1998.
DOI : 10.1364/JOSAB.15.001224

B. Proctor and F. Wise, Quartz prism sequence for reduction of cubic phase in a mode-locked Ti:Al_2O_3 laser, Optics Letters, vol.17, issue.18, pp.1295-1302, 1992.
DOI : 10.1364/OL.17.001295

R. L. Fork, C. H. Cruz, P. C. Becker, and C. V. Shank, Compression of optical pulses to six femtoseconds by using cubic phase compensation, Optics Letters, vol.12, issue.7, p.483, 1987.
DOI : 10.1364/OL.12.000483

P. Tournois, New diffraction grating pair with very linear dispersion for laser pulse compression, Electronics Letters, vol.29, issue.16, p.1414, 1993.
DOI : 10.1049/el:19930947

M. E. Fermann, V. Da-silva, D. A. Smith, A. M. Silberberg, and . Weiner, Shaping of ultrashort optical pulses by using an integrated acousto-optic tunable filter, Optics Letters, vol.18, issue.18, p.1505, 1993.
DOI : 10.1364/OL.18.001505

F. Verluise, V. Laude, Z. Cheng, C. Spielmann, and P. Tournois, Amplitude and phase control of ultrashort pulses by use of an acousto-optic programmable dispersive filter:???pulse compression and shaping, Optics Letters, vol.25, issue.8, pp.575-582, 2000.
DOI : 10.1364/OL.25.000575
URL : https://hal.archives-ouvertes.fr/hal-00095883

J. Seres, A. Müller, E. Seres, K. O-'keeffe, M. Lenner et al., Sub-10-fs, terawatt-scale Ti:sapphire laser system, Optics Letters, vol.28, issue.19, p.1832, 2003.
DOI : 10.1364/OL.28.001832

A. Weiner and I. Introduction, REVIEW ARTICLE Femtosecond pulse shaping using spatial light modulators, Review of Scientific Instruments, vol.71, 2000.

A. Monmayrant and B. Chatel, New phase and amplitude high resolution pulse shaper, Review of Scientific Instruments, vol.75, issue.8, p.2668, 2004.
DOI : 10.1063/1.1771492

A. Monmayrant, Façonnage et caractérisation d'impulsions ultracourtes. Contrôle cohérent de systèmes simples, 2005.

A. Weiner, D. Leaird, J. Patel, J. Wullert, and O. , Programmable shaping of femtosecond optical pulses by use of 128-element liquid crystal phase modulator, IEEE Journal of Quantum Electronics, vol.28, issue.4, pp.908-920, 1992.
DOI : 10.1109/3.135209

M. A. Dugan, J. X. Tull, and W. S. Warren, High-resolution acousto-optic shaping of unamplified and amplified femtosecond laser pulses, Journal of the Optical Society of America B, vol.14, issue.9, p.2348, 1997.
DOI : 10.1364/JOSAB.14.002348

E. Zeek, K. Maginnis, S. Backus, U. Russek, M. Murnane et al., Pulse compression by use of deformable mirrors, Optics Letters, vol.24, issue.7, p.493, 1999.
DOI : 10.1364/OL.24.000493

M. Hacker, G. Stobrawa, and R. Sauerbrey, Micromirror SLM for femtosecond pulse shaping in the ultraviolet, Applied Physics B, vol.76, issue.6, pp.711-714, 2003.
DOI : 10.1007/s00340-003-1180-0

P. G. De-gennes, J. Prost, and R. Pelcovits, The Physics of Liquid Crystals, 1993.

M. M. Wefers and K. A. Nelson, Analysis of programmable ultrashort waveform generation using liquid-crystal spatial light modulators, Journal of the Optical Society of America B, vol.12, issue.7, p.1343, 1995.
DOI : 10.1364/JOSAB.12.001343

H. Wang, Z. Zheng, D. Leaird, A. Weiner, T. Dorschner et al., 20-fs pulse shaping with a 512-element phase-only liquid crystal modulator, IEEE Journal of Selected Topics in Quantum Electronics, vol.7, issue.4, pp.718-727, 2001.
DOI : 10.1109/2944.974244

G. Stobrawa, M. Hacker, T. Feurer, D. Zeidler, M. Motzkus et al., A new high-resolution femtosecond pulse shaper, Applied Physics B, vol.72, issue.5, pp.627-630, 2001.
DOI : 10.1007/s003400100576

J. Vaughan, T. Feurer, K. Stone, and K. A. Nelson, Analysis of replica pulses in femtosecond pulse shaping with pixelated devices, Optics Express, vol.14, issue.3, p.1314, 2006.
DOI : 10.1364/OE.14.001314

C. Dorrer, F. Salin, F. Verluise, and J. Huignard, Programmable phase control of femtosecond pulses by use of a nonpixelated spatial light modulator, Optics Letters, vol.23, issue.9, pp.709-711, 1998.
DOI : 10.1364/OL.23.000709

P. Aubourg, J. P. Huignard, M. Hareng, and R. A. Mullen, Liquid crystal light valve using bulk monocrystalline Bi_12SiO_20 as the photoconductive material, Applied Optics, vol.21, issue.20, p.3706, 1982.
DOI : 10.1364/AO.21.003706

T. Feurer, J. C. Vaughan, R. M. Koehl, and K. Nelson, Multidimensional control of femtosecond pulses by use of a programmable liquid-crystal matrix, Optics Letters, vol.27, issue.8, pp.652-656, 2002.
DOI : 10.1364/OL.27.000652

J. Vaughan, T. Feurer, and K. A. Nelson, Automated two-dimensional femtosecond pulse shaping, Journal of the Optical Society of America B, vol.19, issue.10, pp.2489-2495, 2002.
DOI : 10.1364/JOSAB.19.002489

J. C. Vaughan, T. Feurer, and K. Nelson, Automated spatiotemporal diffraction of ultrashort laser pulses, Optics Letters, vol.28, issue.23, pp.2408-2418, 2003.
DOI : 10.1364/OL.28.002408

T. Hornung, J. C. Vaughan, T. Feurer, and K. Nelson, Degenerate four-wave mixing spectroscopy based on two-dimensional femtosecond pulse shaping, Optics Letters, vol.29, issue.17, pp.2052-2056, 2004.
DOI : 10.1364/OL.29.002052

J. Vaughan, T. Hornung, T. Feurer, and K. A. Nelson, Diffraction-based femtosecond pulse shaping with a two-dimensional spatial light modulator, Optics Letters, vol.30, issue.3, pp.323-325, 2005.
DOI : 10.1364/OL.30.000323

E. Frumker and Y. Silberberg, Femtosecond pulse shaping using a two-dimensional liquid-crystal spatial light modulator, Optics Letters, vol.32, issue.11, pp.1384-1390, 2007.
DOI : 10.1364/OL.32.001384

C. Froehly, A. Lacourt, and J. Vienot, Time impulse response and time frequency response of optical pupils.:Experimental confirmations and applications, Nouvelle Revue d'Optique, vol.4, issue.4, pp.183-196, 1973.
DOI : 10.1088/0335-7368/4/4/301

F. Reynaud, F. Salin, and A. Barthelemy, Measurement of phase shifts introduced by nonlinear optical phenomena on subpicosecond pulses, Optics Letters, vol.14, issue.5, p.275, 1989.
DOI : 10.1364/OL.14.000275

L. Lepetit, G. Chériaux, and M. Joffre, Linear techniques of phase measurement by femtosecond spectral interferometry for applications in spectroscopy, Journal of the Optical Society of America B, vol.12, issue.12, p.2467, 1995.
DOI : 10.1364/JOSAB.12.002467

C. Dorrer, N. Belabas, J. Likforman, and M. Joffre, Spectral resolution and sampling issues in Fourier-transform spectral interferometry, Journal of the Optical Society of America B, vol.17, issue.10, p.1795, 2000.
DOI : 10.1364/JOSAB.17.001795
URL : https://hal.archives-ouvertes.fr/hal-00838177

J. Cooley and J. Tukey, An algorithm for the machine calculation of complex Fourier series, Mathematics of Computation, vol.19, issue.90, pp.297-301, 1965.
DOI : 10.1090/S0025-5718-1965-0178586-1

R. S. Pillai, C. Boudoux, G. Labroille, N. Olivier, I. Veilleux et al., Multiplexed two-photon microscopy of dynamic biological samples with shaped broadband pulses Abstract, Optics Express, vol.17, pp.1695-1701, 2009.

E. Frumker and Y. Silberberg, Phase and amplitude pulse shaping with two-dimensional phase-only spatial light modulators, Journal of the Optical Society of America B, vol.24, issue.12, pp.2940-2947, 2007.
DOI : 10.1364/JOSAB.24.002940

P. Schlup, J. Wilson, K. Hartinger, and R. A. Bartels, Dispersion balancing of variable-delay monolithic pulse splitters, Applied Optics, vol.46, issue.23, p.5967, 2007.
DOI : 10.1364/AO.46.005967

J. W. Wilson, P. Schlup, and R. A. Bartels, Ultrafast phase and amplitude pulse shaping with a single, one-dimensional, high-resolution phase mask., Optics Express, vol.15, issue.14, pp.8979-87, 2007.
DOI : 10.1364/OE.15.008979

C. Dorrer and F. Salin, Characterization of spectral phase modulation by classical and polarization spectral interferometry, Journal of the Optical Society of America B, vol.15, issue.8, p.2331, 1998.
DOI : 10.1364/JOSAB.15.002331

M. Takeda, H. Ina, and S. Kobayashi, Fourier-transform method of fringe-pattern analysis for computer-based topography and interferometry, Journal of the Optical Society of America, vol.72, issue.1, p.156, 1982.
DOI : 10.1364/JOSA.72.000156

L. Cohen, Time-frequency distributions-a review, Proceedings of the IEEE, vol.77, issue.7, pp.941-981, 1989.
DOI : 10.1109/5.30749

J. Paye, The chronocyclic representation of ultrashort light pulses, IEEE Journal of Quantum Electronics, vol.28, issue.10, pp.2262-2273, 1992.
DOI : 10.1109/3.159533

T. Tanabe, H. Tanabe, Y. Teramura, and F. Kannari, Spatiotemporal measurements based on spatial spectral interferometry for ultrashort optical pulses shaped by a Fourier pulse shaper, Journal of the Optical Society of America B, vol.19, issue.11, p.2795, 2002.
DOI : 10.1364/JOSAB.19.002795

T. Tanabe, F. Kannari, F. Korte, J. Koch, and B. Chichkov, Influence of spatiotemporal coupling induced by an ultrashort laser pulse shaper on a focused beam profile, Applied Optics, vol.44, issue.6, p.1092, 2005.
DOI : 10.1364/AO.44.001092

M. B. Danailov and I. P. Christov, Time-space Shaping of Light Pulses by Fourier Optical Processing, Journal of Modern Optics, vol.22, issue.6, p.7, 1989.
DOI : 10.1007/BFb0057980

M. M. Wefers and K. A. Nelson, Space-time profiles of shaped ultrafast optical waveforms, IEEE Journal of Quantum Electronics, vol.32, issue.1, pp.161-172, 1996.
DOI : 10.1109/3.481933

C. Dorrer and F. Salin, Phase amplitude coupling in spectral phase modulation Selected Topics in Quantum Electronics, IEEE Journal, vol.4, pp.342-345, 1998.

B. Sussman, R. Lausten, and A. Stolow, Focusing of light following a 4-f pulse shaper: Considerations for quantum control, Physical Review A, vol.77, 2008.

F. Frei, A. Galler, and T. Feurer, Space-time coupling in femtosecond pulse shaping and its effects on coherent control, The Journal of Chemical Physics, vol.130, issue.3, p.34302, 2009.
DOI : 10.1063/1.3058478

J. Paye and A. Migus, Space???time Wigner functions and their application to the analysis of a pulse shaper, Journal of the Optical Society of America B, vol.12, issue.8, p.1480, 1995.
DOI : 10.1364/JOSAB.12.001480

S. A. Rice, New Ideas for Guiding the Evolution of a Quantum System, Science, vol.258, issue.5081, pp.412-415, 1992.
DOI : 10.1126/science.258.5081.412

W. S. Warren, H. Rabitz, and M. Dahleh, Coherent Control of Quantum Dynamics: The Dream Is Alive, Science, vol.259, issue.5101, pp.1581-1590, 1993.
DOI : 10.1126/science.259.5101.1581

P. Nuernberger, G. Vogt, T. Brixner, and G. Gerber, Femtosecond quantum control of molecular dynamics in the condensed phase, Physical Chemistry Chemical Physics, vol.74, issue.9, pp.2470-97, 2007.
DOI : 10.1039/b618760a

M. Göppert-mayer, ??ber Elementarakte mit zwei Quantenspr??ngen, Annalen der Physik, vol.38, issue.3, pp.273-294, 1931.
DOI : 10.1002/andp.19314010303

. Schnitzer, Advances in Light Microscopy for Neuroscience Annual review of neuroscience 32, pp.435-506, 2009.

W. Supatto, T. V. Truong, D. Débarre, and E. Beaurepaire, Advances in multiphoton microscopy for imaging embryos Current opinion in genetics & development, 2011.

F. Helmchen and W. Denk, Deep tissue two-photon microscopy, Nature Methods, vol.63, issue.12, pp.932-972, 2005.
DOI : 10.1038/nmeth818

K. Isobe, S. Kataoka, R. Murase, W. Watanabe, T. Higashi et al., Stimulated parametric emission microscopy, Optics Express, vol.14, issue.2, p.786, 2006.
DOI : 10.1364/OPEX.14.000786

S. Huang, A. A. Heikal, and W. W. Webb, Two-Photon Fluorescence Spectroscopy and Microscopy of NAD(P)H and Flavoprotein, Biophysical Journal, vol.82, issue.5, pp.2811-2836, 2002.
DOI : 10.1016/S0006-3495(02)75621-X

D. Meshulach and Y. Silberberg, Coherent quantum control of multiphoton transitions by shaped ultrashort optical pulses, Physical Review A, vol.60, issue.2, pp.1287-1292, 1999.
DOI : 10.1103/PhysRevA.60.1287

K. A. Walowicz, I. Pastirk, V. V. Lozovoy, and M. Dantus, Multiphoton Intrapulse Interference. 1. Control of Multiphoton Processes in Condensed Phases, The Journal of Physical Chemistry A, vol.106, issue.41, pp.9369-9373, 2002.
DOI : 10.1021/jp0258964

M. Salour, Quantum interference effects in two-photon spectroscopy, Reviews of Modern Physics, vol.50, issue.3, pp.667-681, 1978.
DOI : 10.1103/RevModPhys.50.667

B. Broers, L. Noordam, H. Van-linden-van-den, and . Heuvell, Diffraction and focusing of spectral energy in multiphoton processes, Physical Review A, vol.46, issue.5, pp.2749-2756, 1992.
DOI : 10.1103/PhysRevA.46.2749

P. Nuernberger, K. F. Lee, and M. Joffre, Femtosecond Spectroscopy from the Perspective of a Global Multidimensional Response Function, Accounts of Chemical Research, vol.42, issue.9, pp.1433-1474, 2009.
DOI : 10.1021/ar900001w
URL : https://hal.archives-ouvertes.fr/hal-00811677

C. Xu, J. Guild, W. Webb, and W. Denk, Determination of absolute two-photon excitation cross sections by in situ second-order autocorrelation, Optics Letters, vol.20, issue.23, p.2372, 1995.
DOI : 10.1364/OL.20.002372

C. Xu and W. W. Webb, Measurement of two-photon excitation cross sections of molecular fluorophores with data from 690 to 1050 nm, Journal of the Optical Society of America B, vol.13, issue.3, p.481, 1996.
DOI : 10.1364/JOSAB.13.000481

K. Isobe, A. Suda, M. Tanaka, F. Kannari, H. Kawano et al., Fourier-transform spectroscopy combined with a 5-fs broadband pulse for multispectral nonlinear microscopy, Physical Review A, vol.77, issue.6, pp.1-13, 2008.
DOI : 10.1103/PhysRevA.77.063832

V. V. Lozovoy, I. Pastirk, K. A. Walowicz, and M. Dantus, Multiphoton intrapulse interference. II. Control of two- and three-photon laser induced fluorescence with shaped pulses, The Journal of Chemical Physics, vol.118, issue.7, p.3187, 2003.
DOI : 10.1063/1.1531620

J. M. Cruz, I. Pastirk, V. V. Lozovoy, K. A. Walowicz, and M. Dantus, Multiphoton Intrapulse Interference 3:?? Probing Microscopic Chemical Environments, The Journal of Physical Chemistry A, vol.108, issue.1, pp.53-58, 2004.
DOI : 10.1021/jp036150o

G. Labroille, R. S. Pillai, X. Solinas, C. Boudoux, N. Olivier et al., Dispersion-based pulse shaping for multiplexed two-photon fluorescence microscopy, Optics Letters, vol.35, issue.20, pp.3444-3450, 2010.
DOI : 10.1364/OL.35.003444.m001
URL : https://hal.archives-ouvertes.fr/hal-00805068

M. Comstock, V. V. Lozovoy, I. Pastirk, and M. Dantus, Multiphoton intrapulse interference 6; binary phase shaping, Optics Express, vol.12, issue.6, p.1061, 2004.
DOI : 10.1364/OPEX.12.001061.m001

V. Lozovoy, B. Xu, J. Shane, and M. Dantus, Selective nonlinear optical excitation with pulses shaped by pseudorandom Galois fields, Physical Review A, vol.74, issue.4, 2006.
DOI : 10.1103/PhysRevA.74.041805

N. Forget, Communication privée, 2008.

K. Isobe, A. Suda, M. Tanaka, F. Kannari, H. Kawano et al., Multifarious control of two-photon excitation of multiple fluorophores achieved by phase modulation of ultra-broadband laser pulses, Optics Express, vol.17, issue.16, p.13737, 2009.
DOI : 10.1364/OE.17.013737

R. Judson and H. Rabitz, Teaching lasers to control molecules, Physical Review Letters, vol.68, issue.10, pp.1500-1503, 1992.
DOI : 10.1103/PhysRevLett.68.1500

A. Assion, T. Baumert, M. Bergt, T. Brixner, B. Kiefer et al., Control of Chemical Reactions by Feedback-Optimized Phase-Shaped Femtosecond Laser Pulses, Science, vol.282, issue.5390, pp.919-922, 1998.
DOI : 10.1126/science.282.5390.919

T. Hornung, R. Meier, D. Zeidler, K. Kompa, D. Proch et al., Optimal control of one- and two-photon transitions with shaped femtosecond pulses and feedback, Applied Physics B, vol.71, issue.3, pp.277-284, 2000.
DOI : 10.1007/s003400000346

T. Brixner, N. H. Damrauer, P. Niklaus, and G. Gerber, Photoselective adaptive femtosecond quantum control in the liquid phase, Nature, vol.414, issue.6859, pp.57-60, 2001.
DOI : 10.1038/35102037

R. Bartels, S. Backus, E. Zeek, L. Misoguti, G. Vdovin et al., Shaped-pulse optimization of coherent emission of highharmonic soft X-rays, Nature, vol.406, pp.164-170, 2000.

W. Wohlleben, T. Buckup, J. L. Herek, and M. Motzkus, Coherent Control for Spectroscopy and Manipulation of Biological Dynamics, ChemPhysChem, vol.313, issue.5, pp.850-857, 2005.
DOI : 10.1002/cphc.200400414

L. Bonacina, J. Extermann, A. Rondi, V. Boutou, and J. Wolf, Multiobjective genetic approach for optimal control of photoinduced processes, Physical Review A, vol.76, issue.2, 2007.
DOI : 10.1103/PhysRevA.76.023408
URL : https://hal.archives-ouvertes.fr/hal-00960204

D. Zeidler, S. Frey, K. Kompa, and M. Motzkus, Evolutionary algorithms and their application to optimal control studies, Physical Review A, vol.64, issue.2, 2001.
DOI : 10.1103/PhysRevA.64.023420

K. Deb, A. Pratap, S. Agarwal, and T. Meyarivan, A fast and elitist multiobjective genetic algorithm: NSGA-II, IEEE Transactions on Evolutionary Computation, vol.6, issue.2, pp.182-197, 2002.
DOI : 10.1109/4235.996017
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.17.7771

N. Dudovich, D. Oron, and Y. Silberberg, Quantum Control of the Angular Momentum Distribution in Multiphoton Absorption Processes, Physical Review Letters, vol.92, issue.10, pp.1-4, 2004.
DOI : 10.1103/PhysRevLett.92.103003

A. Pe-'er, B. Dayan, A. Friesem, and Y. Silberberg, Temporal Shaping of Entangled Photons, Physical Review Letters, vol.94, pp.1-4, 2005.

V. V. Lozovoy and M. Dantus, Systematic Control of Nonlinear Optical Processes Using Optimally Shaped Femtosecond Pulses, ChemPhysChem, vol.50, issue.10, pp.1970-2000, 2005.
DOI : 10.1002/cphc.200400342

I. A. Walmsley and C. Dorrer, Characterization of ultrashort electromagnetic pulses, Advances in Optics and Photonics, vol.1, issue.2, p.308, 2009.
DOI : 10.1364/AOP.1.000308

D. Kane and R. Trebino, Characterization of arbitrary femtosecond pulses using frequency-resolved optical gating, IEEE Journal of Quantum Electronics, vol.29, issue.2, pp.571-579, 1993.
DOI : 10.1109/3.199311

J. Paye, How to measure the amplitude and phase of an ultrashort light pulse with an autocorrelator and a spectrometer, IEEE Journal of Quantum Electronics, vol.30, issue.11, pp.2693-2697, 1994.
DOI : 10.1109/3.333728

C. Iaconis and I. Walmsley, Spectral phase interferometry for direct electric-field reconstruction of ultrashort optical pulses, Optics Letters, vol.23, issue.10, p.792, 1998.
DOI : 10.1364/OL.23.000792

R. Trebino, Frequency-resolved optical gating: the measurement of ultrashort laser pulses, 2000.
DOI : 10.1007/978-1-4615-1181-6

M. Anderson, A. Monmayrant, S. Gorza, P. Wasylczyk, and I. Walmsley, SPIDER: A decade of measuring ultrashort pulses, Laser Physics Letters, vol.5, issue.4, pp.259-266, 2008.
DOI : 10.1002/lapl.200710129

C. Dorrer, P. Londero, and I. A. Walmsley, Homodyne detection in spectral phase interferometry for direct electric-field reconstruction, Optics Letters, vol.26, issue.19, p.1510, 2001.
DOI : 10.1364/OL.26.001510

B. Vacano, T. Buckup, and M. Motzkus, Shaper-assisted collinear SPIDER: fast and simple broadband pulse compression in nonlinear microscopy, Journal of the Optical Society of America B, vol.24, issue.5, p.1091, 2007.
DOI : 10.1364/JOSAB.24.001091

J. Sung, B. Chen, and S. Lim, Single-beam homodyne SPIDER for multiphoton microscopy, Optics Letters, vol.33, issue.13, p.1404, 2008.
DOI : 10.1364/OL.33.001404

A. Monmayrant, M. Joffre, T. Oksenhendler, R. Herzog, D. Kaplan et al., Time-domain interferometry for direct electric-field reconstruction by use of an acousto-optic programmable filter and a two-photon detector, Optics Letters, vol.28, issue.4, p.278, 2003.
DOI : 10.1364/OL.28.000278
URL : https://hal.archives-ouvertes.fr/hal-00836882

N. Forget, V. Crozatier, and T. Oksenhendler, Pulse-measurement techniques using a single amplitude and phase spectral shaper, Journal of the Optical Society of America B, vol.27, issue.4, p.742, 2010.
DOI : 10.1364/JOSAB.27.000742

P. Schön and S. Brasselet, Application of single-beam homodyne SPIDER for the control of complex spectral phase profiles, Optics Letters, vol.36, issue.6, p.805, 2011.
DOI : 10.1364/OL.36.000805

K. W. Delong, D. N. Fittinghoff, R. Trebino, B. Kohler, and K. Wilson, Pulse retrieval in frequency-resolved optical gating based on the method of generalized projections, Optics Letters, vol.19, issue.24, p.2152, 1994.
DOI : 10.1364/OL.19.002152

D. Kane, Recent progress toward real-time measurement of ultrashort laser pulses, IEEE Journal of Quantum Electronics, vol.35, issue.4, pp.421-431, 1999.
DOI : 10.1109/3.753647

D. Reid, Algorithm for complete and rapid retrieval of ultrashort pulse amplitude and phase from a sonogram, IEEE Journal of Quantum Electronics, vol.35, issue.11, pp.1584-1589, 1999.
DOI : 10.1109/3.798079

D. N. Fittinghoff, J. A. Squier, C. Barty, J. N. Sweetser, R. Trebino et al., Collinear type II second-harmonic-generation frequency-resolved optical gating for use with high-numerical-aperture objectives, Optics Letters, vol.23, issue.13, p.1046, 1998.
DOI : 10.1364/OL.23.001046

I. Amat-roldán, I. G. Cormack, P. Loza-alvarez, and D. Artigas, Measurement of electric field by interferometric spectral trace observation, Optics Letters, vol.30, issue.9, p.1063, 2005.
DOI : 10.1364/OL.30.001063

I. Amat-roldán, I. G. Cormack, P. Loza-alvarez, E. J. Gualda, and D. Artigas, Ultrashort pulse characterisation with SHG collinear-FROG, Optics Express, vol.12, issue.6, p.1169, 2004.
DOI : 10.1364/OPEX.12.001169

J. Extermann, L. Bonacina, F. Courvoisier, D. Kiselev, Y. Mugnier et al., Nano-FROG: Frequency resolved optical gating by a nanometric object, Optics Express, vol.16, issue.14, p.10405, 2008.
DOI : 10.1364/OE.16.010405
URL : https://hal.archives-ouvertes.fr/hal-01266401

A. Weiner, Effect of group velocity mismatch on the measurement of ultrashort optical pulses via second harmonic generation, IEEE Journal of Quantum Electronics, vol.19, issue.8, pp.1276-1283, 1983.
DOI : 10.1109/JQE.1983.1072036

A. Galler and T. Feurer, Pulse shaper assisted short laser pulse characterization, Applied Physics B, vol.12, issue.3-4, pp.427-430, 2008.
DOI : 10.1007/s00340-007-2924-z

D. Yelin, D. Meshulach, and Y. Silberberg, Adaptive femtosecond pulse compression, Optics Letters, vol.22, issue.23, p.1793, 1997.
DOI : 10.1364/OL.22.001793

T. Baumert, T. Brixner, V. Seyfried, M. Strehle, and G. Gerber, Femtosecond pulse shaping by an evolutionary algorithm with feedback, Applied Physics B: Lasers and Optics, vol.65, issue.6, pp.779-782, 1997.
DOI : 10.1007/s003400050346

V. V. Lozovoy, I. Pastirk, and M. Dantus, Multiphoton intrapulse interference???IV???Ultrashort laser pulse spectral phase characterization and compensation, Optics Letters, vol.29, issue.7, p.775, 2004.
DOI : 10.1364/OL.29.000775

B. Xu, J. M. Gunn, J. M. Cruz, V. V. Lozovoy, and M. Dantus, Quantitative investigation of the multiphoton intrapulse interference phase scan method for simultaneous phase measurement and compensation of femtosecond laser pulses, Journal of the Optical Society of America B, vol.23, issue.4, p.750, 2006.
DOI : 10.1364/JOSAB.23.000750

V. V. Lozovoy, B. Xu, Y. Coello, and M. Dantus, Direct measurement of spectral phase for ultrashort laser pulses, Optics Express, vol.16, issue.2, pp.592-599, 2008.
DOI : 10.1364/OE.16.000592

Y. Coello, V. V. Lozovoy, T. C. Gunaratne, B. Xu, I. Borukhovich et al., Interference without an interferometer: a different approach to measuring, compressing, and shaping ultrashort laser pulses, Journal of the Optical Society of America B, vol.25, issue.6, p.140, 2008.
DOI : 10.1364/JOSAB.25.00A140

J. A. Armstrong, MEASUREMENT OF PICOSECOND LASER PULSE WIDTHS, Applied Physics Letters, vol.10, issue.1, p.16, 1967.
DOI : 10.1063/1.1754787

K. Sala, G. Kenney-wallace, and G. Hall, CW autocorrelation measurements of picosecond laser pulses, IEEE Journal of Quantum Electronics, vol.16, issue.9, pp.990-996, 1980.
DOI : 10.1109/JQE.1980.1070606

T. Mindl, P. Hefferle, S. Schneider, and F. Dorr, Characterisation of a train of subpicosecond laser pulses by fringe resolved autocorrelation measurements, Applied Physics B Photophysics and Laser Chemistry, vol.1, issue.4, pp.201-207, 1983.
DOI : 10.1007/BF00690788

J. M. Diels, J. J. Fontaine, I. C. Mcmichael, and F. Simoni, Control and measurement of ultrashort pulse shapes (in amplitude and phase) with femtosecond accuracy, Applied Optics, vol.24, issue.9, p.1270, 1985.
DOI : 10.1364/AO.24.001270

K. Naganuma, K. Mogi, and H. Yamada, General method for ultrashort light pulse chirp measurement, IEEE Journal of Quantum Electronics, vol.25, issue.6, pp.1225-1233, 1989.
DOI : 10.1109/3.29252

J. K. Ranka, A. L. Gaeta, A. Baltuska, M. S. Pshenichnikov, and D. A. Wiersma, Autocorrelation measurement of 6-fs pulses based on the two-photon-induced photocurrent in a GaAsP photodiode, Optics Letters, vol.22, issue.17, p.1344, 1997.
DOI : 10.1364/OL.22.001344

N. Scherer, R. Carlson, A. Matro, and M. Du, Fluorescence???detected wave packet interferometry: Time resolved molecular spectroscopy with sequences of femtosecond phase???locked pulses, The Journal of Chemical Physics, vol.95, issue.3, p.1487, 1991.
DOI : 10.1063/1.461064

B. Xu, Y. Coello, V. V. Lozovoy, D. A. Harris, and M. Dantus, Pulse shaping of octave spanning femtosecond laser pulses, Optics Express, vol.14, issue.22, p.10939, 2006.
DOI : 10.1364/OE.14.010939

B. Xu, Y. Coello, V. V. Lozovoy, D. A. Harris, and M. Dantus, Pulse Shaping of Octave Spanning Femtosecond Laser Pulses, Conference on Lasers and Electro-Optics (CLEO), pp.1-2, 2007.

A. Baltuska, M. Pshenichnikov, and D. Wiersma, Second-harmonic generation frequency-resolved optical gating in the single-cycle regime, IEEE Journal of Quantum Electronics, vol.35, issue.4, pp.459-478, 1999.
DOI : 10.1109/3.753651

D. Fittinghoff, A. Millard, J. Squier, and M. Muller, Frequency-resolved optical gating measurement of ultrashort pulses passing through a high numerical aperture objective, IEEE Journal of Quantum Electronics, vol.35, issue.4, pp.479-486, 1999.
DOI : 10.1109/3.753652

P. Desjardins, A. Dumoulin, C. Gasnier, B. Grena, and A. Hudavert, Rapport final de Projet Scientifique Collectif Construction d'une ligne d'interféromètre, 2010.

]. A. Mougel, Stage de Recherche M1: Façonnage Diffractif d'Impulsions Femtosecondes et Application à la Dynamique Spectrale dans une Fibre Optique

G. Stibenz and G. Steinmeyer, Interferometric frequency-resolved optical gating, Optics Express, vol.13, issue.7, p.2617, 2005.
DOI : 10.1364/OPEX.13.002617

M. Muller, J. Squier, and G. J. Brakenhoff, Measurement of femtosecond pulses in the focal point of a high-numerical-aperture lens by two-photon absorption, Optics Letters, vol.20, issue.9, p.1038, 1995.
DOI : 10.1364/OL.20.001038

J. M. Cruz, I. Pastirk, M. Comstock, V. V. Lozovoy, and M. Dantus, Use of coherent control methods through scattering biological tissue to achieve functional imaging, Proceedings of the National Academy of Sciences, vol.101, issue.49, pp.16996-7001, 2004.
DOI : 10.1073/pnas.0407733101

J. M. Cruz, I. Pastirk, M. Comstock, and M. Dantus, Multiphoton Intrapulse Interference 8. Coherent control through scattering tissue, Optics Express, vol.12, issue.17, p.4144, 2004.
DOI : 10.1364/OPEX.12.004144

P. Tournois, Acousto-optic programmable dispersive filter for adaptive compensation of group delay time dispersion in laser systems, Optics Communications, vol.140, issue.4-6, pp.245-249, 1997.
DOI : 10.1016/S0030-4018(97)00153-3

E. Frumker, D. Oron, D. Mandelik, and Y. Silberberg, Femtosecond pulse-shape modulation at kilohertz rates, Optics Letters, vol.29, issue.8, p.890, 2004.
DOI : 10.1364/OL.29.000890

E. Frumker and Y. Silberberg, Femtosecond pulse shaping using a two-dimensional liquid-crystal spatial light modulator, Optics Letters, vol.32, issue.11, p.1384, 2007.
DOI : 10.1364/OL.32.001384

A. M. Larson and A. T. Yeh, Ex vivo characterization of sub-10-fs pulses, Optics Letters, vol.31, issue.11, p.1681, 2006.
DOI : 10.1364/OL.31.001681

E. Wieschaus and C. Nüsslein-volhard, Looking at embryos in Drosophila: A practical approach, 1986.

I. Davis, C. H. Girdham, and P. H. , A Nuclear GFP That Marks Nuclei in Living Drosophila Embryos; Maternal Supply Overcomes a Delay in the Appearance of Zygotic Fluorescence, Developmental Biology, vol.170, issue.2, pp.726-735, 1995.
DOI : 10.1006/dbio.1995.1251

W. Amir, R. Carriles, E. E. Hoover, T. Planchon, C. G. Durfee et al., Simultaneous imaging of multiple focal planes using a two-photon scanning microscope, Optics Letters, vol.32, issue.12, pp.1731-1734, 2007.
DOI : 10.1364/OL.32.001731

R. Carriles, K. E. Sheetz, E. E. Hoover, J. Squier, and V. Barzda, Simultaneous multifocal, multiphoton, photon counting microscopy, Optics Express, vol.16, issue.14, pp.10364-71, 2008.
DOI : 10.1364/OE.16.010364

E. Chandler, E. Hoover, J. Field, K. Sheetz, W. Amir et al., High-resolution mosaic imaging with multifocal, multiphoton photon-counting microscopy, Applied Optics, vol.48, issue.11, pp.2067-77, 2009.
DOI : 10.1364/AO.48.002067

W. Langbein, I. Rocha-mendoza, and P. Borri, Single source coherent anti-Stokes Raman microspectroscopy using spectral focusing, Applied Physics Letters, vol.95, issue.8, p.81109, 2009.
DOI : 10.1063/1.3216073
URL : http://orca.cf.ac.uk/9237/1/Single_source_coherent_anti-Stokes_Raman_microspectroscopy_using.pdf

I. Rocha-mendoza, W. Langbein, P. Watson, and P. Borri, Differential coherent anti-Stokes Raman scattering microscopy with linearly chirped femtosecond laser pulses, Optics Letters, vol.34, issue.15, pp.2258-60, 2009.
DOI : 10.1364/OL.34.002258

H. Ai, S. G. Olenych, P. Wong, M. W. Davidson, and R. E. Campbell, Hue-shifted monomeric variants of Clavularia cyan fluorescent protein: identification of the molecular determinants of color and applications in fluorescence imaging, BMC Biology, vol.6, issue.1, p.13, 2008.
DOI : 10.1186/1741-7007-6-13

S. E. Tillo, T. E. Hughes, N. S. Makarov, A. Rebane, and M. Drobizhev, A new approach to dual-color two-photon microscopy with fluorescent proteins, BMC Biotechnology, vol.10, issue.1, p.6, 2010.
DOI : 10.1186/1472-6750-10-6

M. Drobizhev, N. S. Makarov, S. E. Tillo, T. E. Hughes, and A. Rebane, Two-photon absorption properties of fluorescent proteins, Nature Methods, vol.8, issue.5, pp.393-402, 2011.
DOI : 10.1016/j.chembiol.2009.10.009

P. H. Ribeiro, C. Schwob, A. Maître, and C. Fabre, Sub-shot-noise high-sensitivity spectroscopy with optical parametric oscillator twin beams, Optics Letters, vol.22, issue.24, pp.1893-1898, 1997.
DOI : 10.1364/OL.22.001893
URL : https://hal.archives-ouvertes.fr/hal-00431052

J. Gao, F. Cui, C. Xue, C. Xie, and P. Kunchi, Generation and application of twin beams from an optical parametric oscillator including an ?-cut KTP crystal, Optics Letters, vol.23, issue.11, pp.870-872, 1998.
DOI : 10.1364/OL.23.000870

F. Marin, Demonstration of high sensitivity spectroscopy with squeezed semiconductor lasers, Optics Communications, vol.140, issue.1-3, pp.146-157, 1997.
DOI : 10.1016/S0030-4018(97)00151-X

C. R. Rao, Information and the Accuracy Attainable in the Estimation of Statistical Parameters, Bull Calcutta Math Soc, vol.37, pp.81-91, 1945.
DOI : 10.1007/978-1-4612-0919-5_16

C. Caves, K. Thorne, R. Drever, V. Sandberg, and M. Zimmermann, On the measurement of a weak classical force coupled to a quantum-mechanical oscillator

C. Caves, Quantum-mechanical noise in an interferometer, Physical Review D, vol.23, issue.8, pp.1693-1708, 1981.
DOI : 10.1103/PhysRevD.23.1693

R. Slusher, L. Hollberg, B. Yurke, J. Mertz, and J. Valley, Observation of Squeezed States Generated by Four-Wave Mixing in an Optical Cavity, Physical Review Letters, vol.55, issue.22, pp.2409-2412, 1985.
DOI : 10.1103/PhysRevLett.55.2409

L. Wu, H. Kimble, J. Hall, and H. Wu, Generation of Squeezed States by Parametric Down Conversion, Physical Review Letters, vol.57, issue.20, pp.2520-2523, 1986.
DOI : 10.1103/PhysRevLett.57.2520

N. Treps, N. Grosse, W. P. Bowen, C. Fabre, H. Bachor et al., A Quantum Laser Pointer, Science, vol.301, issue.5635, pp.940-943, 2003.
DOI : 10.1126/science.1086489

J. K. Ranka, R. S. Windeler, and A. J. Stentz, Visible continuum generation in air???silica microstructure optical fibers with anomalous dispersion at 800 nm, Optics Letters, vol.25, issue.1, p.25, 2000.
DOI : 10.1364/OL.25.000025

K. M. Hilligsoe, T. V. Andersen, H. N. Paulsen, C. K. Nielsen, K. Molmer et al., Supercontinuum generation in a photonic crystal fiber with two zero dispersion wavelengths, Optics Express, vol.12, issue.6, p.1045, 2004.
DOI : 10.1364/OPEX.12.001045.m001