P. J. Campagnola, A. C. Millard, M. Terasaki, P. E. Hoppe, C. J. Malone et al., Three-Dimensional High-Resolution Second-Harmonic Generation Imaging of Endogenous Structural Proteins in Biological Tissues, Biophysical Journal, vol.82, issue.1, pp.493-508, 2002.
DOI : 10.1016/S0006-3495(02)75414-3

W. R. Zipfel, R. Williams, R. Christie, A. Nikitin, B. Hyman et al., Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation, Proc. Natl. Acad. Sci. USA, pp.7075-7080, 2003.
DOI : 10.1073/pnas.0832308100

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165832

. Schanne-klein, Three-dimensional investigation and scoring of extracellular matrix remodeling during lung fibrosis using multiphoton microscopy, Microsc. Res. Tech, vol.70, issue.2, pp.162-170, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00144476

M. Strupler, M. Hernest, C. Fligny, J. Martin, P. Tharaux et al., Second harmonic microscopy to quantify renal interstitial fibrosis and arterial remodeling, Journal of Biomedical Optics, vol.13, issue.5, p.54041, 2008.
DOI : 10.1117/1.2981830

URL : https://hal.archives-ouvertes.fr/hal-00324221

S. V. Plotnikov, A. Millard, P. Campagnola, and W. Mohler, Characterization of the Myosin-Based Source for Second-Harmonic Generation from Muscle Sarcomeres, Biophysical Journal, vol.90, issue.2, pp.328-339, 2006.
DOI : 10.1529/biophysj.105.071555

F. Tiaho, G. Recher, and D. Roù-ede, Estimation of helical angles of myosin and collagen by second harmonic generation imaging microscopy, Optics Express, vol.15, issue.19, pp.12286-12295, 2007.
DOI : 10.1364/OE.15.012286

URL : https://hal.archives-ouvertes.fr/hal-00905326

A. Deniset-besseau, J. Duboisset, E. Benichou, F. Hache, P. Brevet et al., Measurement of the Second-Order Hyperpolarizability of the Collagen Triple Helix and Determination of Its Physical Origin, The Journal of Physical Chemistry B, vol.113, issue.40, pp.13437-13445, 2009.
DOI : 10.1021/jp9046837

URL : https://hal.archives-ouvertes.fr/hal-00838920

V. Nucciotti, C. Stringari, L. Sacconi, F. Vanzi, L. Fusi et al., Probing myosin structural conformation in vivo by second-harmonic generation microscopy, Proc. Natl. Acad. Sci. USA, pp.7763-7768, 2010.
DOI : 10.1073/pnas.0914782107

S. Roth and I. Freund, Second harmonic generation in collagen, The Journal of Chemical Physics, vol.70, issue.4, pp.1637-1643, 1979.
DOI : 10.1063/1.437677

P. Stoller, K. Reiser, P. Celliers, and A. Rubenchik, Polarization-Modulated Second Harmonic Generation in Collagen, Biophysical Journal, vol.82, issue.6, pp.3330-3342, 2002.
DOI : 10.1016/S0006-3495(02)75673-7

P. Stoller, P. Celliers, K. Reiser, and A. Rubenchik, Quantitative second-harmonic generation microscopy in collagen, Applied Optics, vol.42, issue.25, pp.5209-5219, 2003.
DOI : 10.1364/AO.42.005209

R. Williams, W. R. Zipfel, and W. Webb, Interpreting Second-Harmonic Generation Images of Collagen I Fibrils, Biophysical Journal, vol.88, issue.2, pp.1377-1386, 2005.
DOI : 10.1529/biophysj.104.047308

A. Erikson, J. Ortegren, T. Hompland, C. De-lange-davies, and M. Lindgren, Quantification of the second-order nonlinear susceptibility of collagen I using a laser scanning microscope, Journal of Biomedical Optics, vol.12, issue.4, p.44002, 2007.
DOI : 10.1117/1.2772311

X. Han, R. M. Burke, M. L. Zettel, P. Tang, and E. B. Brown, Second harmonic properties of tumor collagen: determining the structural relationship between reactive stroma and healthy stroma, Optics Express, vol.16, issue.3, pp.1846-1859, 2008.
DOI : 10.1364/OE.16.001846

J. C. Mansfield, C. P. Winlove, J. Moger, and S. J. Matcher, Collagen fiber arrangement in normal and diseased cartilage studied by polarization sensitive nonlinear microscopy, Journal of Biomedical Optics, vol.13, issue.4, p.44020, 2008.
DOI : 10.1117/1.2950318

D. A¨?ta¨?t-belkacem, A. Gasecka, F. Munhoz, S. Brustlein, and S. Brasselet, Influence of birefringence on polarization resolved nonlinear microscopy and collagen SHG structural imaging, Opt. Express, vol.18, issue.14, pp.14859-14870, 2010.

O. Nadiarnykh and P. J. Campagnola, Retention of polarization signatures in SHG microscopy of scattering tissues through optical clearing, Optics Express, vol.17, issue.7, pp.5794-5806, 2009.
DOI : 10.1364/OE.17.005794

M. Strupler, A. Pena, M. Hernest, P. Tharaux, J. Martin et al., Second harmonic imaging and scoring of collagen in fibrotic tissues, Optics Express, vol.15, issue.7, pp.4054-4065, 2007.
DOI : 10.1364/OE.15.004054.m003

URL : https://hal.archives-ouvertes.fr/hal-00824058

N. J. Kemp, H. N. Zaatari, J. Park, H. G. Rylander, and T. E. Milner, Form-biattenuance in fibrous tissues measured with polarization-sensitive optical coherence tomography (PS-OCT), Optics Express, vol.13, issue.12, pp.4611-4628, 2005.
DOI : 10.1364/OPEX.13.004611.m004

J. Park, N. J. Kemp, H. G. Rylander, and T. E. Milner, Complex polarization ratio to determine polarization properties of anisotropic tissue using polarization-sensitive optical coherence tomography, Optics Express, vol.17, issue.16, pp.13402-13417, 2009.
DOI : 10.1364/OE.17.013402

N. Olivier and E. Beaurepaire, Third-harmonic generation microscopy with focus-engineered beams: a numerical study, Optics Express, vol.16, issue.19, pp.14703-14715, 2008.
DOI : 10.1364/OE.16.014703.m001

URL : https://hal.archives-ouvertes.fr/hal-00324222

P. Schön, M. Behrndt, D. A¨?ta¨?t-belkacem, H. Rigneault, and S. Brasselet, Polarization and phase pulse shaping applied to structural contrast in nonlinear microscopy imaging, Physical Review A, vol.81, issue.1, p.13809, 2010.
DOI : 10.1103/PhysRevA.81.013809

X. D. Wang and L. H. Wang, Propagation of polarized light in birefringent turbid media: A Monte Carlo study, Journal of Biomedical Optics, vol.7, issue.3, pp.279-290, 2002.
DOI : 10.1117/1.1483315

R. Lacomb, O. Nadiarnykh, S. Carey, S. , and P. J. Campagnola, Quantitative second harmonic generation imaging and modeling of the optical clearing mechanism in striated muscle and tendon, Journal of Biomedical Optics, vol.13, issue.2, p.21109, 2008.
DOI : 10.1117/1.2907207

T. Boulesteix, A. Pena, N. Pagès, G. Godeau, M. Sauviat et al., Micrometer scale ex vivo multiphoton imaging of unstained arterial wall structure, Cytometry, vol.69, issue.1, pp.20-26, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00018750

R. F. Guthoff, A. Zhivov, and O. Stachs, confocal microscopy, an inner vision of the cornea - a major review, Clinical & Experimental Ophthalmology, vol.12, issue.1, pp.100-117, 2009.
DOI : 10.1111/j.1442-9071.2009.02016.x

M. Gora, K. Karnowski, M. Szkulmowski, B. J. Kaluzny, R. Huber et al., Ultra high-speed swept source OCT imaging of the anterior segment of human eye at 200 kHz with adjustable imaging range, Optics Express, vol.17, issue.17, pp.14880-14894, 2009.
DOI : 10.1364/OE.17.014880.m007

G. Latour, G. Georges, L. S. Lamoine, C. Deumié, J. Conrath et al., Human graft cornea and laser incisions imaging with micrometer scale resolution full-field optical coherence tomography, Journal of Biomedical Optics, vol.15, issue.5, p.56006, 2010.
DOI : 10.1117/1.3486544.4

K. Plamann, F. Aptel, C. L. Arnold, A. Courjaud, C. Crotti et al., Ultrashort pulse laser surgery of the cornea and the sclera, Journal of Optics, vol.12, issue.8, pp.12-084002, 2010.
DOI : 10.1088/2040-8978/12/8/084002

URL : https://hal.archives-ouvertes.fr/hal-00557937

M. Hao, K. Flynn, C. Nien-shy, B. E. Jester, M. Winkler et al., In vivo non-linear optical (NLO) imaging in live rabbit eyes using the Heidelberg Two-Photon Laser Ophthalmoscope, Experimental Eye Research, vol.91, issue.2, pp.308-314, 2010.
DOI : 10.1016/j.exer.2010.06.007

P. J. Campagnola, A. C. Millard, M. Terasaki, P. E. Hoppe, C. J. Malone et al., Three-Dimensional High-Resolution Second-Harmonic Generation Imaging of Endogenous Structural Proteins in Biological Tissues, Biophysical Journal, vol.82, issue.1, pp.493-508, 2002.
DOI : 10.1016/S0006-3495(02)75414-3

W. R. Zipfel, R. M. Williams, R. Christie, A. Y. Nikitin, B. T. Hyman et al., Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation, Proceedings of the National Academy of Sciences, vol.100, issue.12, pp.7075-7080, 2003.
DOI : 10.1073/pnas.0832308100

D. W. Piston, B. R. Masters, and W. W. Webb, Three-dimensionally resolved NAD(P)H cellular metabolic redox imaging of the in situ cornea with two-photon excitation laser scanning microscopy, Journal of Microscopy, vol.12, issue.1, pp.20-27, 1995.
DOI : 10.1111/j.1365-2818.1995.tb03576.x

A. T. Yeh, N. Nassif, A. Zoumi, and B. J. Tromberg, Selective corneal imaging using combined second-harmonic generation and two-photon excited fluorescence, Optics Letters, vol.27, issue.23, pp.2082-2084, 2002.
DOI : 10.1364/OL.27.002082

M. Han, G. Giese, and J. Bille, Second harmonic generation imaging of collagen fibrils in cornea and sclera, Optics Express, vol.13, issue.15, pp.5791-5797, 2005.
DOI : 10.1364/OPEX.13.005791

S. Teng, H. Tan, J. Peng, H. Lin, K. H. Kim et al., Multiphoton Autofluorescence and Second-Harmonic Generation Imaging of the Ex Vivo Porcine Eye, Investigative Opthalmology & Visual Science, vol.47, issue.3, pp.1216-1224, 2006.
DOI : 10.1167/iovs.04-1520

N. Morishige, T. Nishida, and J. J. Jester, Second Harmonic Generation for Visualizing 3-Dimensional Structure of Corneal Collagen Lamellae, Cornea, vol.28, issue.Suppl 1, pp.46-53, 2009.
DOI : 10.1097/ICO.0b013e3181ae9f37

P. Matteini, F. Ratto, F. Rossi, R. Cicchi, C. Stringari et al., Photothermally-induced disordered patterns of corneal collagen revealed by SHG imaging, Optics Express, vol.17, issue.6, pp.4868-4878, 2009.
DOI : 10.1364/OE.17.004868

F. Aptel, N. Olivier, A. Deniset-besseau, J. Legeais, K. Plamann et al., Multimodal Nonlinear Imaging of the Human Cornea, Investigative Opthalmology & Visual Science, vol.51, issue.5, pp.2459-2465, 2010.
DOI : 10.1167/iovs.09-4586

URL : https://hal.archives-ouvertes.fr/hal-00526653

N. Olivier, F. Aptel, K. Plamann, M. Schanne-klein, and E. Beaurepaire, Harmonic microscopy of isotropic and anisotropic microstructure of the human cornea, Optics Express, vol.18, issue.5, pp.5028-5040, 2010.
DOI : 10.1364/OE.18.005028.m003

URL : https://hal.archives-ouvertes.fr/hal-00526666

J. M. Bueno, E. J. Gualda, A. Giakoumaki, P. Pérez-merino, S. Marcos et al., Multiphoton Microscopy of Ex Vivo Corneas after Collagen Cross-Linking, Investigative Opthalmology & Visual Science, vol.52, issue.8, pp.5325-5331, 2011.
DOI : 10.1167/iovs.11-7184

M. Strupler, A. Pena, M. Hernest, P. Tharaux, J. Martin et al., Second harmonic imaging and scoring of collagen in fibrotic tissues, Optics Express, vol.15, issue.7, pp.4054-4065, 2007.
DOI : 10.1364/OE.15.004054.m003

URL : https://hal.archives-ouvertes.fr/hal-00824058

A. Deniset-besseau, J. Duboisset, E. Benichou, F. Hache, P. Brevet et al., Measurement of the Second-Order Hyperpolarizability of the Collagen Triple Helix and Determination of Its Physical Origin, The Journal of Physical Chemistry B, vol.113, issue.40, pp.13437-13445, 2009.
DOI : 10.1021/jp9046837

URL : https://hal.archives-ouvertes.fr/hal-00838920

R. Lacomb, O. Nadiarnykh, S. S. Townsend, and P. J. Campagnola, Phase matching considerations in second harmonic generation from tissues: Effects on emission directionality, conversion efficiency and observed morphology, Optics Communications, vol.281, issue.7, pp.281-1823, 2008.
DOI : 10.1016/j.optcom.2007.10.040

M. Strupler and M. Schanne-klein, Simulating Second Harmonic Generation from Tendon - Do We See Fibrils?, Biomedical Optics and 3-D Imaging, 2010.
DOI : 10.1364/BIOMED.2010.BTuD83

M. Rivard, M. Laliberté, A. Bertrand-grenier, C. Harnagea, C. P. Pfeffer et al., The structural origin of second harmonic generation in fascia, Biomedical Optics Express, vol.2, issue.1, pp.26-36, 2011.
DOI : 10.1364/BOE.2.000026

URL : https://hal.archives-ouvertes.fr/pasteur-00819387

F. Tiaho, G. Recher, and D. Rouède, Estimation of helical angles of myosin and collagen by second harmonic generation imaging microscopy, Optics Express, vol.15, issue.19, pp.12286-12295, 2007.
DOI : 10.1364/OE.15.012286

URL : https://hal.archives-ouvertes.fr/hal-00905326

P. Stoller, K. M. Reiser, P. M. Celliers, and A. M. Rubenchik, Polarization-Modulated Second Harmonic Generation in Collagen, Biophysical Journal, vol.82, issue.6, pp.3330-3342, 2002.
DOI : 10.1016/S0006-3495(02)75673-7

O. Nadiarnykh and P. J. Campagnola, Retention of polarization signatures in SHG microscopy of scattering tissues through optical clearing, Optics Express, vol.17, issue.7, pp.5794-5806, 2009.
DOI : 10.1364/OE.17.005794

I. Gusachenko, G. Latour, and M. Schanne-klein, Polarization-resolved Second Harmonic microscopy in anisotropic thick tissues, Optics Express, vol.18, issue.18, pp.19339-19352, 2010.
DOI : 10.1364/OE.18.019339

URL : https://hal.archives-ouvertes.fr/hal-00807877

S. Brasselet, D. Aït-belkacem, A. Gasecka, F. Munhoz, S. Brustlein et al., Influence of birefringence on polarization resolved nonlinear microscopy and collagen SHG structural imaging, Optics Express, vol.18, issue.14, pp.14859-14870, 2010.
DOI : 10.1364/OE.18.014859

URL : https://hal.archives-ouvertes.fr/hal-00519609

S. Psilodimitrakopoulos, S. I. Santos, I. Amat-roldan, A. K. Thayil, D. Artigas et al., In vivo, pixel-resolution mapping of thick filaments' orientation in nonfibrilar muscle using polarization-sensitive second harmonic generation microscopy, Journal of Biomedical Optics, vol.14, issue.1, p.14001, 2009.
DOI : 10.1117/1.3059627

W. Chen, T. Li, P. Su, C. Chou, P. T. Fwu et al., Second harmonic generation chi tensor microscopy for tissue imaging, Appl. Phys. Lett, issue.18, pp.94-183902, 2009.

V. Nucciotti, C. Stringari, L. Sacconi, F. Vanzi, L. Fusi et al., Probing myosin structural conformation in vivo by second-harmonic generation microscopy, Proceedings of the National Academy of Sciences, vol.107, issue.17, pp.7763-7768, 2010.
DOI : 10.1073/pnas.0914782107

S. V. Plotnikov, A. C. Millard, P. J. Campagnola, and W. A. Mohler, Characterization of the Myosin-Based Source for Second-Harmonic Generation from Muscle Sarcomeres, Biophysical Journal, vol.90, issue.2, pp.693-703, 2006.
DOI : 10.1529/biophysj.105.071555

P. Réfrégier, M. Roche, and S. Brasselet, Precision analysis in polarization-resolved second harmonic generation microscopy, Optics Letters, vol.36, issue.11, pp.2149-2151, 2011.
DOI : 10.1364/OL.36.002149

J. C. Mansfield, C. P. Winlove, J. Moger, and S. J. Matcher, Collagen fiber arrangement in normal and diseased cartilage studied by polarization sensitive nonlinear microscopy, Journal of Biomedical Optics, vol.13, issue.4, p.44020, 2008.
DOI : 10.1117/1.2950318

L. J. Bour, Polarized light and the eye, p.13, 1991.

W. Radner, M. Zehetmayer, R. Aufreiter, and R. Mallinger, Interlacing and Cross-Angle Distribution of Collagen Lamellae in the Human Cornea, Cornea, vol.17, issue.5, pp.537-543, 1998.
DOI : 10.1097/00003226-199809000-00012

S. Allgeier, A. Zhivov, F. Eberle, B. Koehler, S. Maier et al., Image Reconstruction of the Subbasal Nerve Plexus with In Vivo Confocal Microscopy, Investigative Opthalmology & Visual Science, vol.52, issue.9, pp.5022-5028, 2011.
DOI : 10.1167/iovs.10-6065

R. Abrahams and M. , Mechanical behaviour of tendonIn vitro, Medical & Biological Engineering, vol.46, issue.5, pp.433-443, 1967.
DOI : 10.1007/BF02479137

P. J. Campagnola, A. C. Millard, M. Terasaki, P. E. Hoppe, C. J. Malone et al., Three-Dimensional High-Resolution Second-Harmonic Generation Imaging of Endogenous Structural Proteins in Biological Tissues, Biophysical Journal, vol.82, issue.1, pp.493-508, 2002.
DOI : 10.1016/S0006-3495(02)75414-3

V. W. Cheng and H. R. Screen, The micro-structural strain response of tendon, Journal of Materials Science, vol.24, issue.8, pp.8957-8965, 2007.
DOI : 10.1007/s10853-007-1653-3

P. Ciarletta, B. Amar, and M. , A finite dissipative theory of temporary interfibrillar bridges in the extracellular matrix of ligaments and tendons, Journal of The Royal Society Interface, vol.29, issue.6, 2009.
DOI : 10.1016/0021-9290(95)00136-0

G. Cox, E. Kable, A. Jones, I. K. Fraser, F. Manconi et al., 3-Dimensional imaging of collagen using second harmonic generation, Journal of Structural Biology, vol.141, issue.1, pp.53-62, 2003.
DOI : 10.1016/S1047-8477(02)00576-2

A. Deniset-besseau, J. Duboisset, E. Benichou, F. Hache, and P. F. Brevet, Measurement of the Second-Order Hyperpolarizability of the Collagen Triple Helix and Determination of Its Physical Origin, The Journal of Physical Chemistry B, vol.113, issue.40, pp.13437-13445, 2009.
DOI : 10.1021/jp9046837

URL : https://hal.archives-ouvertes.fr/hal-00838920

A. Erikson, J. Ortegren, T. Hompland, C. D. Davies, and M. Lindgren, Quantification of the second-order nonlinear susceptibility of collagen I using a laser scanning microscope, Journal of Biomedical Optics, vol.12, issue.4, p.44002, 2007.
DOI : 10.1117/1.2772311

M. Franchi, M. Fini, M. Quaranta, V. D. Pasquale, M. Raspanti et al., Crimp morphology in relaxed and stretched rat Achilles tendon, Journal of Anatomy, vol.26, issue.1, pp.1-7, 2007.
DOI : 10.1016/0047-6374(96)01729-0

P. Fratzl, Cellulose and collagen: from fibres to tissues, Current Opinion in Colloid & Interface Science, vol.8, issue.1, pp.32-39, 2003.
DOI : 10.1016/S1359-0294(03)00011-6

D. T. Fung, J. B. Sereysky, J. Basta-pljakic, D. M. Laudier, R. Huq et al., Second Harmonic Generation Imaging and Fourier Transform Spectral Analysis Reveal Damage in Fatigue-Loaded Tendons, Annals of Biomedical Engineering, vol.99, issue.17, pp.1741-1751, 2010.
DOI : 10.1007/s10439-010-9976-7

I. Freund, M. Deutsch, and A. Sprecher, Connective tissue polarity. Optical second-harmonic microscopy, crossed-beam summation, and small-angle scattering in rat-tail tendon, Biophysical Journal, vol.50, issue.4, pp.693-712, 1986.
DOI : 10.1016/S0006-3495(86)83510-X

H. S. Gupta, J. Seto, S. Krauss, P. Boesecke, and H. R. Screen, In situ multi-level analysis of viscoelastic deformation mechanisms in tendon collagen, Journal of Structural Biology, vol.169, issue.2, pp.183-191, 2010.
DOI : 10.1016/j.jsb.2009.10.002

I. Gusachenko, G. Latour, and M. Schanne-klein, Polarization-resolved Second Harmonic microscopy in anisotropic thick tissues, Optics Express, vol.18, issue.18, pp.19339-19352, 2010.
DOI : 10.1364/OE.18.019339

URL : https://hal.archives-ouvertes.fr/hal-00807877

K. A. Hansen, J. A. Weiss, and J. K. Barton, Recruitment of Tendon Crimp With Applied Tensile Strain, Journal of Biomechanical Engineering, vol.124, issue.1, pp.72-77, 2002.
DOI : 10.1115/1.1427698

J. Kastelic, A. Galeski, and E. Baer, The Multicomposite Structure of Tendon, Connective Tissue Research, vol.9, issue.1, pp.11-23, 1978.
DOI : 10.1016/0022-2836(75)90373-3

R. F. Ker, Mechanics of tendon, from an engineering perspective, International Journal of Fatigue, vol.29, issue.6, pp.1001-1009, 2007.
DOI : 10.1016/j.ijfatigue.2006.09.020

R. Lacomb, O. Nadiarnykh, S. S. Townsend, and P. J. Campagnola, Phase matching considerations in second harmonic generation from tissues: Effects on emission directionality, conversion efficiency and observed morphology, Optics Communications, vol.281, issue.7, pp.1823-1832, 2008.
DOI : 10.1016/j.optcom.2007.10.040

F. Legare, C. Pfeffer, and B. R. Olsen, The Role of Backscattering in SHG Tissue Imaging, Biophysical Journal, vol.93, issue.4, pp.1312-1320, 2007.
DOI : 10.1529/biophysj.106.100586

K. Legerlotz, G. P. Riley, and H. R. Screen, Specimen dimensions influence the measurement of material properties in tendon fascicles, Journal of Biomechanics, vol.43, issue.12, pp.2274-2280, 2010.
DOI : 10.1016/j.jbiomech.2010.04.040

A. Pena, T. Boulesteix, T. Dartigalongue, and M. Schanne-klein, Chiroptical Effects in the Second Harmonic Signal of Collagens I and IV, Journal of the American Chemical Society, vol.127, issue.29, pp.10314-10322, 2005.
DOI : 10.1021/ja0520969

URL : https://hal.archives-ouvertes.fr/hal-00829225

R. Puxkandl, I. Zizak, O. Paris, J. Keckes, W. Tesch et al., Viscoelastic properties of collagen: synchrotron radiation investigations and structural model, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.357, issue.1418, pp.191-197, 2002.
DOI : 10.1098/rstb.2001.1033

A. Redaelli, S. Vesentini, M. Soncini, P. Vena, S. Mantero et al., Possible role of decorin glycosaminoglycans in fibril to fibril force transfer in relative mature tendons???a computational study from molecular to microstructural level, Journal of Biomechanics, vol.36, issue.10, pp.1555-1569, 2003.
DOI : 10.1016/S0021-9290(03)00133-7

B. J. Rigby, N. Hirai, J. D. Spikes, and H. Eyring, The Mechanical Properties of Rat Tail Tendon, The Journal of General Physiology, vol.43, issue.2, pp.265-283, 1959.
DOI : 10.1085/jgp.43.2.265

A. Rivard, M. Laliberté, A. Bertrand-grenier, C. Harnagea, C. P. Pfeffer et al., The structural origin of second haronic generation in fascia Local strain measurement within tendon, Biomed. Opt. Express Strain, vol.2, issue.40, pp.157-163, 2004.

H. R. Screen, J. C. Shelton, V. H. Chhaya, M. V. Kayser, D. L. Bader et al., The Influence of Noncollagenous Matrix Components on the Micromechanical Environment of Tendon Fascicles, Annals of Biomedical Engineering, vol.223, issue.2, pp.1090-1099, 2005.
DOI : 10.1007/s10439-005-5777-9

A. Sionkowska and T. Wess, Mechanical properties of UV irradiated rat tail tendon (RTT) collagen, International Journal of Biological Macromolecules, vol.34, issue.1-2, pp.9-12, 2004.
DOI : 10.1016/j.ijbiomac.2003.10.001

P. Stoller, P. M. Celliers, K. M. Reiser, and A. M. Rubenchik, Quantitative second-harmonic generation microscopy in collagen, Applied Optics, vol.42, issue.25, pp.5209-5219, 2003.
DOI : 10.1364/AO.42.005209

P. Stoller, K. M. Reiser, P. M. Celliers, and A. M. Rubenchik, Polarization-Modulated Second Harmonic Generation in Collagen, Biophysical Journal, vol.82, issue.6, pp.3330-3342, 2002.
DOI : 10.1016/S0006-3495(02)75673-7

M. Strupler, A. Pena, M. Hernest, P. L. Tharaux, J. Martin et al., Second harmonic imaging and scoring of collagen in fibrotic tissues, Optics Express, vol.15, issue.7, pp.4054-4065, 2007.
DOI : 10.1364/OE.15.004054.m003

URL : https://hal.archives-ouvertes.fr/hal-00824058

M. Strupler and M. Schanne-klein, Simulating second harmonic generation from tendon: do we see fibrils? Biomedical Optics, 2010.

S. Vesentini, A. Redaelli, and F. M. Montevecchi, Estimation of the binding force of the collagen molecule-decorin core protein complex in collagen fibril, Journal of Biomechanics, vol.38, issue.3, 2005.
DOI : 10.1016/j.jbiomech.2004.04.032

A. Viidik and R. Ekholm, Light and electron microscopic studies of collagen fibers under strain, Zeitschrift f???r Anatomie und Entwicklungsgeschichte, vol.312, issue.2, pp.154-164, 1968.
DOI : 10.1007/BF00521981

R. M. Williams, W. R. Zipfel, and W. W. Webb, Interpreting Second-Harmonic Generation Images of Collagen I Fibrils, Biophysical Journal, vol.88, issue.2, pp.1377-1386, 2005.
DOI : 10.1529/biophysj.104.047308

W. R. Zipfel, R. M. Williams, R. Christie, A. Y. Nikitin, B. T. Hyman et al., Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation, Proc. Natl. Acad. Sci. USA, pp.7075-7080, 2003.
DOI : 10.1073/pnas.0832308100

A. Zoumi, A. Yeh, and B. J. Tromberg, Imaging cells and extracellular matrix in vivo by using second-harmonic generation and two-photon excited fluorescence, Proc. Natl. Acad. Sci. USA 99, pp.11014-11019, 2002.
DOI : 10.1073/pnas.172368799

R. 1. Stoller, P. , K. M. Reiser, and A. M. Rubenchik, Polarization-Modulated Second Harmonic Generation in Collagen, Biophysical Journal, vol.82, issue.6, pp.3330-3342, 2002.
DOI : 10.1016/S0006-3495(02)75673-7

R. M. Williams, W. R. Zipfel, and W. W. Webb, Interpreting Second-Harmonic Generation Images of Collagen I Fibrils, Biophysical Journal, vol.88, issue.2, pp.1377-1386, 2005.
DOI : 10.1529/biophysj.104.047308

S. V. Plotnikov, A. Millard, and W. Mohler, Characterization of the Myosin-Based Source for Second-Harmonic Generation from Muscle Sarcomeres, Biophysical Journal, vol.90, issue.2, pp.693-703, 2006.
DOI : 10.1529/biophysj.105.071555

A. Erikson, J. O-¨-rtegren, and M. Lindgren, Quantification of the second-order nonlinear susceptibility of collagen I using a laser scanning microscope, Journal of Biomedical Optics, vol.12, issue.4, p.44002, 2007.
DOI : 10.1117/1.2772311

F. Tiaho, G. Recher, and D. Rouède, Estimation of helical angles of myosin and collagen by second harmonic generation imaging microscopy, Optics Express, vol.15, issue.19, pp.12286-12295, 2007.
DOI : 10.1364/OE.15.012286

URL : https://hal.archives-ouvertes.fr/hal-00905326

X. Han, R. M. Burke, and E. B. Brown, Second harmonic properties of tumor collagen: determining the structural relationship between reactive stroma and healthy stroma, Optics Express, vol.16, issue.3, pp.1846-1859, 2008.
DOI : 10.1364/OE.16.001846

J. C. Mansfield, C. P. Winlove, and S. J. Matcher, Collagen fiber arrangement in normal and diseased cartilage studied by polarization sensitive nonlinear microscopy, Journal of Biomedical Optics, vol.13, issue.4, p.44020, 2008.
DOI : 10.1117/1.2950318

S. Psilodimitrakopoulos, D. Artigas, and P. Loza-alvarez, Quantitative discrimination between endogenous SHG sources in, Biophysical Journal, vol.102, issue.9, pp.2220-2229, 2009.

. Gusachenko, mammalian tissue, based on their polarization response, Opt. Express, vol.17, pp.10168-10176

I. Gusachenko, G. Latour, and M. Schanne-klein, Polarization-resolved Second Harmonic microscopy in anisotropic thick tissues, Optics Express, vol.18, issue.18, pp.19339-19352, 2010.
DOI : 10.1364/OE.18.019339

URL : https://hal.archives-ouvertes.fr/hal-00807877

D. A?¨ta?¨t-belkacem, A. Gasecka, and S. Brasselet, Influence of birefringence on polarization resolved nonlinear microscopy and collagen SHG structural imaging, Opt. Express, vol.18, pp.14859-14870, 2010.

P. J. Su, W. L. Chen, and C. Y. Dong, Determination of Collagen Nanostructure from Second-Order Susceptibility Tensor Analysis, Biophysical Journal, vol.100, issue.8, pp.2053-2062, 2011.
DOI : 10.1016/j.bpj.2011.02.015

A. E. Tuer, S. Krouglov, and V. Barzda, Nonlinear Optical Properties of Type I Collagen Fibers Studied by Polarization Dependent Second Harmonic Generation Microscopy, The Journal of Physical Chemistry B, vol.115, issue.44, pp.12759-12769, 2011.
DOI : 10.1021/jp206308k

G. Latour, I. Gusachenko, and M. C. Schanne-klein, In vivo structural imaging of the cornea by polarization-resolved second harmonic microscopy, Biomedical Optics Express, vol.3, issue.1, pp.1-15, 2012.
DOI : 10.1364/BOE.3.000001.m005

URL : https://hal.archives-ouvertes.fr/hal-00324465

P. J. Campagnola, A. C. Millard, and W. A. Mohler, Three-Dimensional High-Resolution Second-Harmonic Generation Imaging of Endogenous Structural Proteins in Biological Tissues, Biophysical Journal, vol.82, issue.1, pp.493-508, 2002.
DOI : 10.1016/S0006-3495(02)75414-3

W. R. Zipfel, R. M. Williams, and W. W. Webb, Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation, Proc. Natl. Acad. Sci. USA, pp.7075-7080, 2003.
DOI : 10.1073/pnas.0832308100

M. Strupler, A. Pena, and M. C. Schanne-klein, Second harmonic imaging and scoring of collagen in fibrotic tissues, Optics Express, vol.15, issue.7, pp.4054-4065, 2007.
DOI : 10.1364/OE.15.004054.m003

URL : https://hal.archives-ouvertes.fr/hal-00824058

A. Deniset-besseau, P. De-sa, M. C. Peixoto, and . Schanne-klein, Nonlinear optical imaging of lyotropic cholesteric liquid crystals, Optics Express, vol.18, issue.2, pp.1113-1121, 2010.
DOI : 10.1364/OE.18.001113.m001

URL : https://hal.archives-ouvertes.fr/hal-00497888

D. J. Hulmes, Building Collagen Molecules, Fibrils, and Suprafibrillar Structures, Journal of Structural Biology, vol.137, issue.1-2, pp.2-10, 2002.
DOI : 10.1006/jsbi.2002.4450

URL : https://hal.archives-ouvertes.fr/hal-00313823

D. A. Parry and A. S. Craig, Quantitative electron microscope observations of the collagen fibrils in rat-tail tendon, Biopolymers, vol.102, issue.5, pp.1015-1031, 1977.
DOI : 10.1002/bip.1977.360160506

S. Roth and I. Freund, Second harmonic generation in collagen, The Journal of Chemical Physics, vol.70, issue.4, pp.1637-1643, 1979.
DOI : 10.1063/1.437677

O. Nadiarnykh and P. J. Campagnola, Retention of polarization signatures in SHG microscopy of scattering tissues through optical clearing, Optics Express, vol.17, issue.7, pp.5794-5806, 2009.
DOI : 10.1364/OE.17.005794

R. Puxkandl and I. Zizak, Viscoelastic properties of collagen: synchrotron radiation investigations and structural model, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.357, issue.1418, pp.191-197, 2002.
DOI : 10.1098/rstb.2001.1033

H. R. Screen, D. L. Bader, and J. C. Shelton, Local Strain Measurement within Tendon, Strain, vol.218, issue.4, pp.157-163, 2004.
DOI : 10.1016/S0736-0266(00)00075-9

Y. G. Houssen, I. Gusachenko, and J. M. Allain, Monitoring micrometer-scale collagen organization in rat-tail tendon upon mechanical strain using second harmonic microscopy, Journal of Biomechanics, vol.44, issue.11, pp.2047-2052, 2011.
DOI : 10.1016/j.jbiomech.2011.05.009

URL : https://hal.archives-ouvertes.fr/hal-00611334

D. Sage, MIJ: a JAVA package for bi-directional communication and data exchange from MATLAB to ImageJ/Fiji, 2011.

P. N. Butcher and D. Cotter, The Elements of Nonlinear Optics, 1990.
DOI : 10.1017/CBO9781139167994

A. Deniset-besseau, J. Duboisset, and M. Schanne-klein, Measurement of the Second-Order Hyperpolarizability of the Collagen Triple Helix and Determination of Its Physical Origin, The Journal of Physical Chemistry B, vol.113, issue.40, pp.13437-13445, 2009.
DOI : 10.1021/jp9046837

URL : https://hal.archives-ouvertes.fr/hal-00838920

K. Beck and B. Brodsky, Supercoiled Protein Motifs: The Collagen Triple-Helix and the ??-Helical Coiled Coil, Journal of Structural Biology, vol.122, issue.1-2, pp.17-29, 1998.
DOI : 10.1006/jsbi.1998.3965

J. P. Orgel, T. C. Irving, and T. J. Wess, Microfibrillar structure of type I collagen in situ, Proc. Natl. Acad. Sci. USA, pp.9001-9005, 2006.
DOI : 10.1073/pnas.0502718103

M. Abrahams, Mechanical behaviour of tendonIn vitro, Medical & Biological Engineering, vol.46, issue.5, pp.433-443, 1967.
DOI : 10.1007/BF02479137

K. A. Hansen, J. A. Weiss, and J. K. Barton, Recruitment of Tendon Crimp With Applied Tensile Strain, Journal of Biomechanical Engineering, vol.124, issue.1, pp.72-77, 2002.
DOI : 10.1115/1.1427698

H. R. Screen, J. C. Shelton, and D. A. Lee, The Influence of Noncollagenous Matrix Components on the Micromechanical Environment of Tendon Fascicles, Annals of Biomedical Engineering, vol.223, issue.2, pp.1090-1099, 2005.
DOI : 10.1007/s10439-005-5777-9

R. Lacomb, O. Nadiarnykh, and P. J. Campagnola, Phase matching considerations in second harmonic generation from tissues: Effects on emission directionality, conversion efficiency and observed morphology, Optics Communications, vol.281, issue.7, pp.1823-1832, 2008.
DOI : 10.1016/j.optcom.2007.10.040

M. Strupler and M. Schanne-klein, Simulating Second Harmonic Generation from Tendon - Do We See Fibrils?, Biomedical Optics and 3-D Imaging, 2010.
DOI : 10.1364/BIOMED.2010.BTuD83

M. Rivard, M. Laliberté, and F. Légaré, The structural origin of second harmonic generation in fascia, Biomedical Optics Express, vol.2, issue.1, pp.26-36, 2010.
DOI : 10.1364/BOE.2.000026

URL : https://hal.archives-ouvertes.fr/pasteur-00819387

P. Fratzl, Cellulose and collagen: from fibres to tissues, Current Opinion in Colloid & Interface Science, vol.8, issue.1, pp.32-39, 2003.
DOI : 10.1016/S1359-0294(03)00011-6

A. Gautieri, S. Vesentini, and M. J. Buehler, Hierarchical Structure and Nanomechanics of Collagen Microfibrils from the Atomistic Scale Up, Nano Letters, vol.11, issue.2, pp.757-766, 2011.
DOI : 10.1021/nl103943u

J. A. Van-der-rijt, K. O. Van-der-werf, and J. Feijen, Micromechanical Testing of Individual Collagen Fibrils, Macromolecular Bioscience, vol.357, issue.9, pp.697-702, 2006.
DOI : 10.1002/mabi.200600063

Z. L. Shen, M. R. Dodge, and S. J. , Stress-Strain Experiments on Individual Collagen Fibrils, Biophysical Journal, vol.95, issue.8, pp.3956-3963, 2008.
DOI : 10.1529/biophysj.107.124602

I. Rocha-mendoza, D. R. Yankelevich, and A. Knoesen, Sum Frequency Vibrational Spectroscopy: The Molecular Origins of the Optical Second-Order Nonlinearity of Collagen, Biophysical Journal, vol.93, issue.12, pp.4433-4444, 2007.
DOI : 10.1529/biophysj.107.111047

]. S. Roth and I. Freund, Coherent optical harmonic generation in rat-tail tendon, Optics Communications, vol.33, issue.3, pp.292-296, 1980.
DOI : 10.1016/0030-4018(80)90246-1

S. Roth and I. Freund, Optical second-harmonic scattering in rat-tail tendon, Biopolymers, vol.238, issue.6, pp.1271-1290, 1981.
DOI : 10.1002/bip.1981.360200613

S. Roth and I. Freund, Second harmonic generation and orientational order in connective tissue: a mosaic model for fibril orientational ordering in rat-tail tendon, Journal of Applied Crystallography, vol.15, issue.1, pp.72-78, 1982.
DOI : 10.1107/S0021889882011376

I. Freund and M. Deutsch, Second-harmonic microscopy of biological tissue, Optics Letters, vol.11, issue.2, pp.94-98, 1986.
DOI : 10.1364/OL.11.000094

I. Freund, M. Deutsch, and A. Sprecher, Connective tissue polarity. Optical second-harmonic microscopy, crossed-beam summation, and small-angle scattering in rat-tail tendon, Biophysical Journal, vol.50, issue.4, pp.693-712, 1986.
DOI : 10.1016/S0006-3495(86)83510-X

P. Stoller, B. Kim, A. M. Rubenchik, K. M. Reiser, L. B. Da et al., Polarization-dependent optical second-harmonic imaging of a rat-tail tendon, Journal of Biomedical Optics, vol.7, issue.2, pp.205-214, 2002.
DOI : 10.1117/1.1431967

P. Stoller, K. M. Reiser, P. M. Celliers, and A. M. Rubenchik, Polarization-Modulated Second Harmonic Generation in Collagen, Biophysical Journal, vol.82, issue.6, pp.3330-3342, 2002.
DOI : 10.1016/S0006-3495(02)75673-7

P. J. Campagnola, A. C. Millard, M. Terasaki, P. E. Hoppe, C. J. Malone et al., Three-Dimensional High-Resolution Second-Harmonic Generation Imaging of Endogenous Structural Proteins in Biological Tissues, Biophysical Journal, vol.82, issue.1, pp.493-508, 2002.
DOI : 10.1016/S0006-3495(02)75414-3

W. R. Zipfel, R. M. Williams, and W. W. Webb, Nonlinear magic: multiphoton microscopy in the biosciences, Nature Biotechnology, vol.21, issue.11, pp.1369-1377, 2003.
DOI : 10.1038/nbt899

W. R. Zipfel, R. M. Williams, R. Christie, A. Y. Nikitin, B. T. Hyman et al., Live tissue intrinsic emission microscopy using multiphoton-excited native fluorescence and second harmonic generation, Proceedings of the National Academy of Sciences, vol.100, issue.12, pp.7075-7080, 2003.
DOI : 10.1073/pnas.0832308100

P. Stoller, P. M. Celliers, K. M. Reiser, and A. M. Rubenchik, Quantitative second-harmonic generation microscopy in collagen, Applied Optics, vol.42, issue.25, pp.5209-5019, 2003.
DOI : 10.1364/AO.42.005209

C. Hsiao, Y. Sun, W. Lo, S. Lin, S. Jee et al., Imaging Condition Optimization in Multiphoton Microscopy of Three-Dimensional Collagen Fiber Structures, Journal of the Chinese Chemical Society, vol.63, issue.5B, pp.1115-1120, 2004.
DOI : 10.1002/jccs.200400165

R. M. Williams, W. R. Zipfel, and W. W. Webb, Interpreting Second-Harmonic Generation Images of Collagen I Fibrils, Biophysical Journal, vol.88, issue.2, pp.1377-1386, 2005.
DOI : 10.1529/biophysj.104.047308

F. Légaré, C. Pfeffer, and B. R. Olsen, The Role of Backscattering in SHG Tissue Imaging, Biophysical Journal, vol.93, issue.4, pp.1312-1320, 2007.
DOI : 10.1529/biophysj.106.100586

F. Tiaho, G. Recher, and D. Rouede, Estimation of helical angles of myosin and collagen by second harmonic generation imaging microscopy, Optics Express, vol.15, issue.19, pp.12286-12295, 2007.
DOI : 10.1364/OE.15.012286

URL : https://hal.archives-ouvertes.fr/hal-00905326

R. A. Rao, M. R. Mehta, and K. C. Toussaint, Fourier transform-second-harmonic generation imaging of biological tissues, Optics Express, vol.17, issue.17, pp.14534-14576, 2009.
DOI : 10.1364/OE.17.014534.m002

S. Tai, T. Tsai, W. Lee, D. Shieh, Y. Liao et al., Optical biopsy of fixed human skin with backward-collected optical harmonics signals, Optics Express, vol.13, issue.20, pp.8231-8273, 2005.
DOI : 10.1364/OPEX.13.008231.m002

S. Zhuo, J. Chen, T. Luo, and D. Zou, Multimode nonlinear optical imaging of the dermis in ex vivo human skin based on the combination of multichannel mode and Lambda mode, Optics Express, vol.14, issue.17, pp.7810-7830, 2006.
DOI : 10.1364/OE.14.007810

T. Luo, J. X. Chen, S. M. Zhuo, K. C. Lu, X. S. Jiang et al., Visualization of collagen regeneration in mouse dorsal skin using second harmonic generation microscopy, Laser Physics, vol.19, issue.3, pp.478-482, 2009.
DOI : 10.1134/S1054660X09030219

M. Han, G. Giese, and J. Bille, Second harmonic generation imaging of collagen fibrils in cornea and sclera, Optics Express, vol.13, issue.15, pp.5791-5798, 2005.
DOI : 10.1364/OPEX.13.005791

A. T. Yeh, N. Nassif, A. Zoumi, and B. J. Tromberg, Selective corneal imaging using combined second-harmonic generation and two-photon excited fluorescence, Optics Letters, vol.27, issue.23, pp.2082-2086, 2002.
DOI : 10.1364/OL.27.002082

B. Vohnsen and P. Artal, porcine corneas, Journal of Microscopy, vol.21, issue.1, pp.158-63, 2008.
DOI : 10.1111/j.1365-2818.2008.02086.x

R. Pavone and . Pini, Photothermally-induced disordered patterns of corneal collagen revealed by SHG imaging, Optics express, vol.17, pp.4868-78, 2009.

R. A. Rao, M. R. Mehta, S. Leithem, and K. C. Toussaint, Quantitative analysis of forward and backward second-harmonic images of collagen fibers using Fourier transform second-harmonic-generation microscopy, Optics Letters, vol.34, issue.24, pp.3779-81, 2009.
DOI : 10.1364/OL.34.003779

K. G. Brockbank, W. R. Maclellan, J. Xie, S. F. Hamm-alvarez, Z. Z. Chen et al., Quantitative second harmonic generation imaging of cartilage damage, Cell and Tissue Banking, vol.13, issue.4, pp.299-307, 2008.
DOI : 10.1007/s10561-008-9070-7

M. Wang, K. Reiser, and A. Knoesen, Spectral moment invariant analysis of disorder in polarization-modulated second-harmonic-generation images obtained from collagen assemblies, Journal of the Optical Society of America A, vol.24, issue.11, pp.3573-3586, 2007.
DOI : 10.1364/JOSAA.24.003573

A. Pena, A. Fabre, D. Débarre, J. Marchal-somme, B. Crestani et al., Three-dimensional investigation and scoring of extracellular matrix remodeling during lung fibrosis using multiphoton microscopy, Microscopy research and technique, pp.1-9, 2007.
DOI : 10.1002/jemt.20400

URL : https://hal.archives-ouvertes.fr/hal-00144476

M. Strupler, A. Pena, M. Hernest, P. Tharaux, J. Martin et al., Second harmonic imaging and scoring of collagen in fibrotic tissues, Optics Express, vol.15, issue.7, pp.4054-65, 2007.
DOI : 10.1364/OE.15.004054.m003

URL : https://hal.archives-ouvertes.fr/hal-00824058

S. Chu, T. Liu, C. Sun, C. Lin, and H. Tsai, Real-time second-harmonic-generation microscopy based on a 2-GHz repetition rate Ti:sapphire laser, Optics Express, vol.11, issue.8, pp.933-938, 2003.
DOI : 10.1364/OE.11.000933.m003

S. V. Plotnikov, A. C. Millard, P. Campagnola, and W. Mohler, Characterization of the Myosin-Based Source for Second-Harmonic Generation from Muscle Sarcomeres, Biophysical Journal, vol.90, issue.2, pp.693-703, 2006.
DOI : 10.1529/biophysj.105.071555

G. Mizutani, Y. Sonoda, H. Sano, M. Sakamoto, T. Takahashi et al., Detection of starch granules in a living plant by optical second harmonic microscopy, Journal of Luminescence, vol.87, issue.89, pp.89-824, 2000.
DOI : 10.1016/S0022-2313(99)00428-7

G. Cox, N. Moreno, and J. Feijó, Second-harmonic imaging of plant polysaccharides, Journal of Biomedical Optics, vol.10, issue.2, p.24013, 2005.
DOI : 10.1117/1.1896005

R. M. Brown, A. C. Millard, and P. J. Campagnola, Macromolecular structure of cellulose studied by second-harmonic generation imaging microscopy, Optics Letters, vol.28, issue.22, pp.2207-2216, 2003.
DOI : 10.1364/OL.28.002207

O. Nadiarynkh and P. Campagnola, Retention of polarization signatures in SHG microscopy of scattering tissues through optical clearing, Optics Express, vol.17, issue.7, pp.5794-806, 2009.
DOI : 10.1364/OE.17.005794

A. Erikson, J. Ortegren, T. Hompland, C. De-lange-davies, and M. Lindgren, Quantification of the second-order nonlinear susceptibility of collagen I using a laser scanning microscope, Journal of Biomedical Optics, vol.12, issue.4, p.44002, 2007.
DOI : 10.1117/1.2772311

X. Han, R. M. Burke, M. L. Zettel, P. Tang, and E. B. Brown, Second harmonic properties of tumor collagen: determining the structural relationship between reactive stroma and healthy stroma, Optics Express, vol.16, issue.3, pp.1846-59, 2008.
DOI : 10.1364/OE.16.001846

J. C. Mansfield, C. P. Winlove, J. Moger, and S. J. Matcher, Collagen fiber arrangement in normal and diseased cartilage studied by polarization sensitive nonlinear microscopy, Journal of Biomedical Optics, vol.13, issue.4, p.44020, 2008.
DOI : 10.1117/1.2950318

T. Yasui, K. Sasaki, Y. Tohno, and T. Araki, Tomographic Imaging of Collagen Fiber Orientation in Human Tissue Using Depth-Resolved Polarimetry of Second-Harmonic-Generation Light, Optical and Quantum Electronics, vol.82, issue.13-15, pp.1397-1408, 2006.
DOI : 10.1007/s11082-005-4219-0

C. Odin, Y. L. Grand, A. Renault, L. Gailhouste, and G. Baffet, Orientation fields of nonlinear biological fibrils by second harmonic generation microscopy, Journal of Microscopy, vol.4, issue.1, pp.32-38, 2008.
DOI : 10.1073/pnas.172368799

URL : https://hal.archives-ouvertes.fr/hal-00672827

S. Psilodimitrakopoulos, S. I. Santos, I. Amat-roldan, A. K. Thayil, D. Artigas et al., In vivo, pixel-resolution mapping of thick filaments' orientation in nonfibrilar muscle using polarization-sensitive second harmonic generation microscopy, Journal of Biomedical Optics, vol.14, issue.1, p.14001, 2009.
DOI : 10.1117/1.3059627

J. Diamant, A. Keller, E. Baer, M. Litt, and R. G. Arridge, Collagen; Ultrastructure and Its Relation to Mechanical Properties as a Function of Ageing, Proceedings of the Royal Society B: Biological Sciences, vol.180, issue.1060, pp.293-315, 1972.
DOI : 10.1098/rspb.1972.0019

R. M. Alexander and H. C. Bennet-clark, Storage of elastic strain energy in muscle and other tissues, Nature, vol.271, issue.5590, pp.114-117, 1977.
DOI : 10.1007/BF00343160

A. M. Cribb and J. E. Scott, Tendon response to tensile stress: an ultrastructural investigation of collagen:proteoglycan interactions in stressed tendon, Journal of Anatomy, vol.187, pp.423-428, 1995.

N. Sasaki and S. Odajima, Elongation mechanism of collagen fibrils and force-strain relations of tendon at each level of structural hierarchy, Journal of Biomechanics, vol.29, issue.9, pp.1131-1136, 1996.
DOI : 10.1016/0021-9290(96)00024-3

J. Parkinson, A. Brass, G. Canova, and Y. Brechet, The mechanical properties of simulated collagen fibrils, Journal of Biomechanics, vol.30, issue.6, pp.549-554, 1997.
DOI : 10.1016/S0021-9290(96)00151-0

K. Misof, G. Rapp, and P. Fratzl, A new molecular model for collagen elasticity based on synchrotron X-ray scattering evidence, Biophysical Journal, vol.72, issue.3, pp.1376-81, 1997.
DOI : 10.1016/S0006-3495(97)78783-6

P. Fratzl, K. Misof, I. Zizak, G. Rapp, H. Amenitsch et al., Fibrillar Structure and Mechanical Properties of Collagen, Journal of Structural Biology, vol.122, issue.1-2, pp.119-141, 1998.
DOI : 10.1006/jsbi.1998.3966

R. Puxkandl, I. Zizak, O. Paris, J. Keckes, W. Tesch et al., Viscoelastic properties of collagen: synchrotron radiation investigations and structural model, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.357, issue.1418
DOI : 10.1098/rstb.2001.1033

B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts et al., Molecular biology of the cell, 2008.

K. Beck and B. Brodsky, Supercoiled Protein Motifs: The Collagen Triple-Helix and the ??-Helical Coiled Coil, Journal of Structural Biology, vol.122, issue.1-2, pp.17-29, 1998.
DOI : 10.1006/jsbi.1998.3965

Y. Komai and T. Ushiki, The three-dimensional organization of collagen fibrils in the human cornea and sclera, Investigative ophthalmology & visual science, vol.32, pp.2244-58, 1991.

Y. Ezura, S. Chakravarti, A. Oldberg, I. Chervoneva, and D. E. Birk, Differential Expression of Lumican and Fibromodulin Regulate Collagen Fibrillogenesis in Developing Mouse Tendons, The Journal of Cell Biology, vol.124, issue.4, pp.779-88, 2000.
DOI : 10.1002/(SICI)1097-0177(200004)217:4<430::AID-DVDY10>3.0.CO;2-5

T. F. Linsenmayer, J. M. Fitch, and D. E. Birk, Heterotypic Collagen Fibrils and Stabilizing Collagens., Annals of the New York Academy of Sciences, vol.36, issue.1 Structure, Mo, pp.143-160, 1990.
DOI : 10.1016/0014-4835(81)90015-4

J. E. Scott and C. R. Orford, Dermatan sulphate-rich proteoglycan associates with rat tail-tendon collagen at the d band in the gap region, Biochemical Journal, vol.197, issue.1, pp.213-216, 1981.
DOI : 10.1042/bj1970213

J. E. Scott and D. A. Parry, Control of collagen fibril diameters in tissues, International Journal of Biological Macromolecules, vol.14, issue.5, pp.292-295, 1992.
DOI : 10.1016/S0141-8130(05)80043-1

H. K. Graham, D. F. Holmes, R. B. Watson, and K. E. Kadler, Identification of collagen fibril fusion during vertebrate tendon morphogenesis. The process relies on unipolar fibrils and is regulated by collagen-proteoglycan interaction, Journal of Molecular Biology, vol.295, issue.4, pp.891-902, 2000.
DOI : 10.1006/jmbi.1999.3384

D. J. Hulmes, D. F. Holmes, and C. Cummings, Crystalline regions in collagen fibrils, Journal of Molecular Biology, vol.184, issue.3, pp.473-480, 1985.
DOI : 10.1016/0022-2836(85)90295-5

URL : https://hal.archives-ouvertes.fr/hal-00313857

L. Jelinski, C. Sullivan, and D. A. Torchia, 2H NMR study of molecular motion in collagen fibrils, Nature, vol.94, issue.5756, pp.531-534, 1980.
DOI : 10.1038/284531a0

D. J. Hulmes, T. J. Wess, D. J. Prockop, and P. Fratzl, Radial packing, order, and disorder in collagen fibrils, Biophysical Journal, vol.68, issue.5, pp.1661-70, 1995.
DOI : 10.1016/S0006-3495(95)80391-7

URL : https://hal.archives-ouvertes.fr/hal-00313836

J. Woodhead-galloway and P. Machin, Modern theories of liquids and the diffuse equatorial X-ray scattering from collagen, Acta Crystallographica Section A, vol.32, issue.3, pp.368-372, 1976.
DOI : 10.1107/S0567739476000880

M. Grynpas, Three-dimensional packing of collagen in bone, Nature, vol.7, issue.5592, pp.381-382, 1977.
DOI : 10.1038/230434a0

K. E. Kadler, D. F. Holmes, J. A. Trotter, and J. A. Chapman, Collagen fibril formation, Biochemical Journal, vol.316, issue.1, pp.1-11, 1996.
DOI : 10.1042/bj3160001

D. J. Hulmes, Building Collagen Molecules, Fibrils, and Suprafibrillar Structures, Journal of Structural Biology, vol.137, issue.1-2, pp.2-10, 2002.
DOI : 10.1006/jsbi.2002.4450

URL : https://hal.archives-ouvertes.fr/hal-00313823

V. L. Feitosa, B. D. Vidal, and E. R. Pimentel, Optical anisotropy of a pig tendon under compression*, Journal of Anatomy, vol.200, issue.1, pp.105-116, 2002.
DOI : 10.1046/j.0021-8782.2001.00006.x

D. Z. Covizi, S. L. Felisbino, L. Gomes, E. R. Pimentel, and H. F. Carvalho, Regional adaptations in three rat tendons, Tissue and Cell, vol.33, issue.5, pp.483-90, 2001.
DOI : 10.1054/tice.2001.0202

B. De-campos and . Vidal, Image analysis of tendon helical superstructure using interference and polarized light microscopy, Micron, vol.34, pp.423-455, 2003.

R. D. Young, The ultrastructural organization of proteoglycans and collagen in human and rabbit scleral matrix, Journal of Cell Science, vol.74, pp.95-104, 1985.

D. Maurice, The structure and transparency of the cornea, The Journal of Physiology, vol.136, issue.2, pp.263-286, 1957.
DOI : 10.1113/jphysiol.1957.sp005758

W. Radner, M. Zehetmayer, R. Aufreiter, and R. Mallinger, Interlacing and Cross-Angle Distribution of Collagen Lamellae in the Human Cornea, Cornea, vol.17, issue.5, pp.537-543, 1998.
DOI : 10.1097/00003226-199809000-00012

G. B. Benedek, Theory of Transparency of the Eye, Applied Optics, vol.10, issue.3, pp.459-73, 1971.
DOI : 10.1364/AO.10.000459

R. M. Alexander, Energy-saving mechanisms in walking and running, Journal of Experimental Biology, vol.160, pp.55-69, 1991.

S. Vesentini, A. Redaelli, and F. M. Montevecchi, Estimation of the binding force of the collagen molecule-decorin core protein complex in collagen fibril, Journal of Biomechanics, vol.38, issue.3, pp.433-476, 2005.
DOI : 10.1016/j.jbiomech.2004.04.032

P. Ciarletta and M. B. Amar, A finite dissipative theory of temporary interfibrillar bridges in the extracellular matrix of ligaments and tendons, Journal of The Royal Society Interface, vol.29, issue.6, pp.909-933, 2009.
DOI : 10.1016/0021-9290(95)00136-0

F. O. Schmitt, C. E. Hall, and M. A. Jakus, Electron microscope investigations of the structure of collagen, Journal of Cellular and Comparative Physiology, vol.82, issue.1, pp.11-33, 1942.
DOI : 10.1002/jcp.1030200103

C. E. Hall, M. A. Jakus, and F. O. Schmitt, ELECTRON MICROSCOPE OBSERVATIONS OF COLLAGEN, Journal of the American Chemical Society, vol.64, issue.5, pp.1234-1234, 1942.
DOI : 10.1021/ja01257a512

E. A. Chernoff and D. A. Chernoff, Atomic force microscope images of collagen fibers, Journal of Vacuum Science & Technology A: Vacuum, Surfaces, and Films, vol.10, issue.4, pp.596-599, 1992.
DOI : 10.1116/1.577736

D. Baselt, J. Revel, and J. Baldeschwieler, Subfibrillar structure of type I collagen observed by atomic force microscopy, Biophysical Journal, vol.65, issue.6, pp.2644-2655, 1993.
DOI : 10.1016/S0006-3495(93)81329-8

I. Revenko, F. Sommer, D. T. Minh, R. Garrone, and J. M. Franc, Atomic force microscopy study of the collagen fibre structure, Biology of the Cell, vol.80, issue.1, pp.67-76, 1994.
DOI : 10.1016/0248-4900(94)90019-1

URL : https://hal.archives-ouvertes.fr/hal-00312980

M. Gale, M. Pollanen, P. Markiewicz, and M. Goh, Sequential assembly of collagen revealed by atomic force microscopy, Biophysical Journal, vol.68, issue.5, pp.2124-2128, 1995.
DOI : 10.1016/S0006-3495(95)80393-0

T. Gutsmann, G. E. Fantner, J. H. Kindt, M. Venturoni, S. Danielsen et al., Force Spectroscopy of Collagen Fibers to Investigate Their Mechanical Properties and Structural Organization, Biophysical Journal, vol.86, issue.5, pp.3186-93, 2004.
DOI : 10.1016/S0006-3495(04)74366-0

S. Chu, S. Tai, M. Chan, C. Sun, I. Hsiao et al., Thickness dependence of optical second harmonic generation in collagen fibrils, Optics Express, vol.15, issue.19, pp.12005-12015, 2007.
DOI : 10.1364/OE.15.012005

A. Stylianou, M. Kyriazi, K. Politopoulos, and D. Yova, Combined SHG signal information with AFM imaging to assess conformational changes in collagen, 2009 9th International Conference on Information Technology and Applications in Biomedicine
DOI : 10.1109/ITAB.2009.5394311

H. Maeda, An Atomic Force Microscopy Study of Ordered Molecular Assemblies and Concentric Ring Patterns from Evaporating Droplets of Collagen Solutions, Langmuir, vol.15, issue.24, pp.8505-8513, 1999.
DOI : 10.1021/la981738l

G. Mosser, A. Anglo, C. Helary, Y. Bouligand, and M. Giraud-guille, Dense tissue-like collagen matrices formed in cell-free conditions, Matrix Biology, vol.25, issue.1, pp.3-13, 2006.
DOI : 10.1016/j.matbio.2005.09.002

F. Gobeaux, E. Belamie, G. Mosser, P. Davidson, P. Panine et al., Cooperative Ordering of Collagen Triple Helices in the Dense State, Langmuir, vol.23, issue.11, pp.6411-6418, 2007.
DOI : 10.1021/la070093z

URL : https://hal.archives-ouvertes.fr/hal-00184115

L. J. Gathercole, A. Keller, and J. S. Shah, The periodic wave pattern in native tendon collagen: correlation of polarizing with scanning electron microscopy, Journal of Microscopy, vol.10, issue.1, pp.95-105, 1974.
DOI : 10.1111/j.1365-2818.1974.tb03969.x

Y. Feng and T. L. Simpson, Comparison of Human Central Cornea and Limbus in Vivo Using Optical Coherence Tomography, Optometry and Vision Science, vol.82, issue.5, pp.416-419, 2005.
DOI : 10.1097/01.OPX.0000162649.97059.72

C. Ustundag, H. Bahcecioglu, A. Ozdamar, C. Aras, R. Yildirim et al., Optical coherence tomography for evaluation of anatomical changes in the cornea after laser in situ keratomileusis, Journal of Cataract & Refractive Surgery, vol.26, issue.10, pp.1458-62, 2000.
DOI : 10.1016/S0886-3350(00)00558-7

I. Grulkowski, M. Gora, M. Szkulmowski, I. Gorczynska, D. Szlag et al., Anterior segment imaging with Spectral OCT system using a high-speed CMOS camera, Optics Express, vol.17, issue.6, pp.4842-58, 2009.
DOI : 10.1364/OE.17.004842.m009

M. Pircher, E. Götzinger, R. A. Leitgeb, A. Fercher, and C. Hitzenberger, Measurement and imaging of water concentration in human cornea with differential absorption optical coherence tomography, Optics Express, vol.11, issue.18, pp.2190-2197, 2003.
DOI : 10.1364/OE.11.002190.m001

G. Latour, G. Georges, L. S. Lamoine, C. Deumié, J. Conrath et al., Light scattering from human corneal grafts: Bulk and surface contribution, Journal of Applied Physics, vol.108, issue.5, p.53104, 2010.
DOI : 10.1063/1.3452334

URL : https://hal.archives-ouvertes.fr/hal-00524436

G. Latour, G. Georges, L. S. Lamoine, C. Deumié, J. Conrath et al., Human graft cornea and laser incisions imaging with micrometer scale resolution full-field optical coherence tomography, Journal of Biomedical Optics, vol.15, issue.5, p.56006, 2010.
DOI : 10.1117/1.3486544.4

K. Hansen, J. Barton, and J. A. Weiss, Optical coherence tomography imaging of collagenous tissue microstructure, Laser-Tissue Interaction XI: Photochemical, Photothermal, and Photomechanical, 2000.
DOI : 10.1117/12.388081

K. A. Hansen, J. A. Weiss, and J. K. Barton, Recruitment of Tendon Crimp With Applied Tensile Strain, Journal of Biomechanical Engineering, vol.124, issue.1, pp.72-77, 2002.
DOI : 10.1115/1.1427698

A. Podoleanu, J. Rogers, and D. Jackson, OCT en-face images from the retina with adjustable depth resolution in real time, IEEE Journal of Selected Topics in Quantum Electronics, vol.5, issue.4, pp.1176-1184, 1999.
DOI : 10.1109/2944.796344

N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun et al., In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve, Optics Express, vol.12, issue.3, pp.367-376, 2004.
DOI : 10.1364/OPEX.12.000367.m005

W. Denk, J. H. Strickler, and W. W. Webb, Two-photon laser scanning fluorescence microscopy, Science, vol.248, issue.4951, pp.73-76, 1990.
DOI : 10.1126/science.2321027

M. Gu and C. J. Sheppard, Comparison of three-dimensional imaging properties between two-photon and single-photon fluorescence microscopy, Journal of Microscopy, vol.154, issue.2, pp.128-137, 1995.
DOI : 10.1111/j.1365-2818.1995.tb03543.x

P. Franken, A. Hill, C. Peters, and G. Weinreich, Generation of Optical Harmonics, Physical Review Letters, vol.7, issue.4, pp.118-120, 1961.
DOI : 10.1103/PhysRevLett.7.118

D. Débarre, Microscopie par génération detroisì eme harmonique appliquéè al a biologie, 2006.

N. Olivier, Contrast Mechanisms & Wavefront Control in Coherent Nonlinear Microscopy, 2009.
URL : https://hal.archives-ouvertes.fr/pastel-00006255

E. Schanne-klein and . Beaurepaire, Imaging lipid bodies in cells and tissues using third-harmonic generation microscopy, Nature Methods, vol.3, issue.1, pp.47-53, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00681949

D. Débarre, N. Olivier, and E. Beaurepaire, Signal epidetection in third-harmonic generation microscopy of turbid media, Optics Express, vol.15, issue.14, pp.8913-8937, 2007.
DOI : 10.1364/OE.15.008913

N. Olivier, F. Aptel, K. Plamann, M. Schanne-klein, and E. Beaurepaire, Harmonic microscopy of isotropic and anisotropic microstructure of the human cornea, Optics Express, vol.18, issue.5, pp.5028-5068, 2010.
DOI : 10.1364/OE.18.005028.m003

URL : https://hal.archives-ouvertes.fr/hal-00526666

M. D. Duncan, J. Reintjes, and T. J. Manuccia, Scanning coherent anti-Stokes Raman microscope, Optics Letters, vol.7, issue.8, pp.350-352, 1982.
DOI : 10.1364/OL.7.000350

L. Moreaux, O. Sandre, and J. Mertz, Membrane imaging by second-harmonic generation microscopy, Journal of the Optical Society of America B, vol.17, issue.10, pp.1685-1694, 2000.
DOI : 10.1364/JOSAB.17.001685

M. Strupler, Imagerie du collagène par microscopie multiphotonique. Application aux fibroses rénales, 2008.

Y. Barad, H. Eisenberg, M. Horowitz, and Y. Silberberg, Nonlinear scanning laser microscopy by third harmonic generation, Applied Physics Letters, vol.70, issue.8, pp.922-924, 1997.
DOI : 10.1063/1.118442

. Schanne-klein, Measurement of the second-order hyperpolarizability of the collagen triple helix and determination of its physical origin, The journal of physical chemistry. B, vol.113, pp.13437-13482, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00838920

A. E. Tuer, S. Krouglov, N. Prent, R. Cisek, D. Sandkuijl et al., Nonlinear Optical Properties of Type I Collagen Fibers Studied by Polarization Dependent Second Harmonic Generation Microscopy, The Journal of Physical Chemistry B, vol.115, issue.44, pp.12759-69, 2011.
DOI : 10.1021/jp206308k

A. Pena, T. Boulesteix, T. Dartigalongue, and M. Schanne-klein, Chiroptical Effects in the Second Harmonic Signal of Collagens I and IV, Journal of the American Chemical Society, vol.127, issue.29, pp.10314-10336, 2005.
DOI : 10.1021/ja0520969

URL : https://hal.archives-ouvertes.fr/hal-00829225

D. A. Parry and A. S. Craig, Quantitative electron microscope observations of the collagen fibrils in rat-tail tendon, Biopolymers, vol.102, issue.5, pp.1015-1031, 1977.
DOI : 10.1002/bip.1977.360160506

T. Hompland, A. Erikson, M. Lindgren, T. Lindmo, C. De-lange et al., Second-harmonic generation in collagen as a potential cancer diagnostic parameter, Journal of Biomedical Optics, vol.13, issue.5, p.54050, 2008.
DOI : 10.1117/1.2983664

P. Réfrégier, M. Roche, and S. Brasselet, Precision analysis in polarization-resolved second harmonic generation microscopy, Optics Letters, vol.36, issue.11, pp.2149-51, 2011.
DOI : 10.1364/OL.36.002149

I. Amat-roldan, S. Psilodimitrakopoulos, P. Loza-alvarez, and D. Artigas, Fast image analysis in polarization SHG microscopy, Optics Express, vol.18, issue.16, pp.17209-17228, 2010.
DOI : 10.1364/OE.18.017209

J. Duboisset, D. A¨?ta¨?t-belkacem, M. Roche, H. Rigneault, and S. Brasselet, Generic model of the molecular orientational distribution probed by polarization-resolved second-harmonic generation, Physical Review A, vol.85, issue.4, pp.1-9, 2012.
DOI : 10.1103/PhysRevA.85.043829

URL : https://hal.archives-ouvertes.fr/hal-00690339

A. Lembares, X. H. Hu, and G. W. Kalmus, Absorption spectra of corneas in the far ultraviolet region, Investigative ophthalmology & visual science, vol.38, pp.1283-1290, 1997.

C. A. Dailey, B. J. Burke, and G. J. Simpson, The general failure of Kleinman symmetry in practical nonlinear optical applications, Chemical Physics Letters, vol.390, issue.1-3, pp.8-13, 2004.
DOI : 10.1016/j.cplett.2004.03.109

A. E. Tuer, S. Krouglov, R. Cisek, D. Tokarz, and V. Barzda, Three-dimensional visualization of the first hyperpolarizability tensor, Journal of Computational Chemistry, vol.133, issue.6, pp.1128-1134, 2011.
DOI : 10.1002/jcc.21694

L. Bozec, G. Van-der-heijden, and M. Horton, Collagen Fibrils: Nanoscale Ropes, Biophysical Journal, vol.92, issue.1, pp.70-75, 2007.
DOI : 10.1529/biophysj.106.085704

P. Su, W. Chen, Y. Chen, and C. Dong, Determination of Collagen Nanostructure from Second-Order Susceptibility Tensor Analysis, Biophysical Journal, vol.100, issue.8, pp.2053-62, 2011.
DOI : 10.1016/j.bpj.2011.02.015

D. A¨?ta¨?t-belkacem, A. Gasecka, F. Munhoz, S. Brustlein, and S. Brasselet, Influence of birefringence on polarization resolved nonlinear microscopy and collagen SHG structural imaging, Optics express, vol.18, pp.14859-70, 2010.

X. Wang and L. V. Wang, Propagation of polarized light in birefringent turbid media: A Monte Carlo study, Journal of Biomedical Optics, vol.7, issue.3, pp.279-90, 2002.
DOI : 10.1117/1.1483315

M. Xu, Electric field Monte Carlo simulation of polarized light propagation in turbid media, Optics Express, vol.12, issue.26, pp.6530-6539, 2004.
DOI : 10.1364/OPEX.12.006530

J. C. Ramella-roman, S. A. Prahl, and S. L. Jacques, Three Monte Carlo programs of polarized light transport into scattering media: part I, Optics Express, vol.13, issue.12, pp.4420-4438, 2005.
DOI : 10.1364/OPEX.13.004420

D. Arifler, I. Pavlova, A. Gillenwater, and R. Richards-kortum, Light Scattering from Collagen Fiber Networks: Micro-Optical Properties of Normal and Neoplastic Stroma, Biophysical Journal, vol.92, issue.9, pp.3260-74, 2007.
DOI : 10.1529/biophysj.106.089839

L. Novotny and B. Hecht, Principles of nano-optics, 2006.

S. Hacyan and R. Jáuregui, Evolution of optical phase and polarization vortices in birefringent media, Journal of Optics A: Pure and Applied Optics, vol.11, issue.8, p.85204, 2009.
DOI : 10.1088/1464-4258/11/8/085204

P. C. Clemmow, The theory of electromagnetic waves in a simple anisotropic medium, Proceedings of the Institution of Electrical Engineers, vol.110, issue.1, pp.101-106, 1963.
DOI : 10.1049/piee.1963.0015

P. C. Clemmow, The resolution of a dipole field into transverse electric and transverse magnetic waves, Proceedings of the Institution of Electrical Engineers, vol.110, issue.1, pp.107-111, 1963.
DOI : 10.1049/piee.1963.0016

M. Leutenegger, R. A. Rao, R. A. Leitgeb, and T. Lasser, Fast focus field calculations, Optics Express, vol.14, issue.23, pp.11277-91, 2006.
DOI : 10.1364/OE.14.011277

N. J. Kemp, H. Zaatari, J. Park, H. G. Rylander, and T. Milner, Form-biattenuance in fibrous tissues measured with polarization-sensitive optical coherence tomography (PS-OCT), Optics Express, vol.13, issue.12, pp.4611-4639, 2005.
DOI : 10.1364/OPEX.13.004611.m004

J. Park, N. J. Kemp, H. G. Rylander, and T. Milner, Complex polarization ratio to determine polarization properties of anisotropic tissue using polarization-sensitive optical coherence tomography, Optics Express, vol.17, issue.16, pp.13402-13419, 2009.
DOI : 10.1364/OE.17.013402

I. Gusachenko, G. Latour, and M. Schanne-klein, Polarization-resolved Second Harmonic microscopy in anisotropic thick tissues, Optics Express, vol.18, issue.18, pp.19339-52, 2010.
DOI : 10.1364/OE.18.019339

URL : https://hal.archives-ouvertes.fr/hal-00807877

I. Gusachenko, V. Tran, Y. G. Houssen, J. Allain, and M. Schanne-klein, Polarization-Resolved Second-Harmonic Generation in Tendon upon Mechanical Stretching, Biophysical Journal, vol.102, issue.9, pp.2220-2229, 2012.
DOI : 10.1016/j.bpj.2012.03.068

URL : https://hal.archives-ouvertes.fr/hal-00094221

A. N. Bashkatov, E. A. Genina, V. I. Kochubey, and V. V. Tuchin, <title>Estimation of wavelength dependence of refractive index of collagen fibers of scleral tissue</title>, Controlling Tissue Optical Properties: Applications in Clinical Study, pp.265-268, 2000.
DOI : 10.1117/12.405952

G. Latour, I. Gusachenko, L. Kowalczuk, I. Lamarre, and M. Schanne-klein, In vivo structural imaging of the cornea by polarization-resolved second harmonic microscopy, Biomedical Optics Express, vol.3, issue.1, pp.1-15, 2012.
DOI : 10.1364/BOE.3.000001.m005

URL : https://hal.archives-ouvertes.fr/hal-00324465

Y. Goulam-houssen, I. Gusachenko, M. Schanne-klein, and J. Allain, Monitoring micrometer-scale collagen organization in rat-tail tendon upon mechanical strain using second harmonic microscopy, Journal of Biomechanics, vol.44, issue.11, pp.2047-52, 2011.
DOI : 10.1016/j.jbiomech.2011.05.009

URL : https://hal.archives-ouvertes.fr/hal-00611334

N. Mazumder, J. Qiu, M. R. Foreman, C. M. Romero, C. Hu et al., Polarization-resolved second harmonic generation microscopy with a four-channel Stokes-polarimeter, Optics Express, vol.20, issue.13, pp.14090-14099, 2012.
DOI : 10.1364/OE.20.014090

M. Frigo and S. G. Johnson, FFTW: an adaptive software architecture for the FFT, Proceedings of the 1998 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP '98 (Cat. No.98CH36181), pp.1381-1384, 1998.
DOI : 10.1109/ICASSP.1998.681704