A. Abelovich and M. Shilo, Photo-oxidative death in blue-green algae, Journal of Bacteriology, vol.111, pp.682-689, 1972.

C. Y. Ahn, A. S. Chung, and H. M. Oh, Rainfall, phycocyanin, and N:P ratios related to cyanobacterial blooms in a Korean large reservoir, Hydrobiologia, vol.474, issue.1/3, pp.117-124, 2002.
DOI : 10.1023/A:1016573225220

J. An and W. W. Carmichael, Use of a colorimetric protein phosphatase inhibition assay and enzyme linked immunosorbent assay for the study of microcystins and nodularins, Toxicon, vol.32, issue.12, pp.1495-1507, 1994.
DOI : 10.1016/0041-0101(94)90308-5

O. Anneville, V. Ginot, and N. Angeli, Restoration of Lake Geneva: Expected versus observed responses of phytoplankton to decreases in phosphorus, Lakes and Reservoirs: Research and Management, vol.9, issue.2, pp.67-80, 2002.
DOI : 10.1023/A:1017058112298

R. M. Araoz, J. Molgo´, and N. Tandeau-de-marsac, Neurotoxic cyanobacterial toxins, Toxicon, vol.56, issue.5, pp.813-828, 2010.
DOI : 10.1016/j.toxicon.2009.07.036

URL : https://hal.archives-ouvertes.fr/hal-00409807

T. Asaeda, H. S. Pham, D. G. Priyantha, J. Manatunge, and G. C. Hocking, Control of algal blooms in reservoirs with a curtain: a numerical analysis, Ecological Engineering, vol.16, issue.3, pp.395-404, 2001.
DOI : 10.1016/S0925-8574(00)00123-3

A. Atoui, H. Hafez, and K. Slim, Occurrence of toxic cyanobacterial blooms for the first time in Lake Karaoun, Lebanon, Water and Environment Journal, vol.40, issue.2, pp.42-49, 2013.
DOI : 10.1111/j.1747-6593.2012.00324.x

D. L. Bade, Lake Ecosystems (Stratification and Seasonal Mixing Processes, Pelagic and Benthic Coupling), Encyclopedia of Hydrological Sciences, 2005.
DOI : 10.1002/0470848944.hsa114

R. Banker, S. Carmeli, O. Hadas, B. Teltsch, R. Porat et al., IDENTIFICATION OF CYLINDROSPERMOPSIN IN APHANIZOMENON OVALISPORUM (CYANOPHYCEAE) ISOLATED FROM LAKE KINNERET, ISRAEL1, Journal of Phycology, vol.33, issue.4, pp.613-616, 1997.
DOI : 10.1111/j.0022-3646.1997.00613.x

C. Bastien, R. Cardin, E. Veilleux, C. Deblois, A. Warren et al., Performance evaluation of phycocyanin probes for the monitoring of cyanobacteria, J. Environ. Monit., vol.33, issue.2, pp.110-118, 2011.
DOI : 10.1039/C0EM00366B

C. Berger and S. Wells, Modeling the Effects of Macrophytes on Hydrodynamics, Journal of Environmental Engineering, vol.134, issue.9, pp.778-788, 2008.
DOI : 10.1061/(ASCE)0733-9372(2008)134:9(778)

T. Berman and B. Shteinman, Phytoplankton development and turbulent mixing in Lake Kinneret (1992???1996), Journal of Plankton Research, vol.20, issue.4, pp.709-726, 1998.
DOI : 10.1093/plankt/20.4.709

A. Bichara, R. Nemer, J. Fuleihan, N. Al-salihi, and Z. Hajjar, Policy note on irrigation sector sustainability, 2003.

M. Blankinship, M. Chebaane, and M. Saadeh, Canal 900 algae control: testing and validation, Litani Basin Management Advisory Services (BAMAS), 2005.

S. Bogialli, M. Bruno, R. Curini, D. Corcia, A. Fanali et al., Monitoring Algal Toxins in Lake Water by Liquid Chromatography Tandem Mass Spectrometry, Environmental Science & Technology, vol.40, issue.9, pp.2917-2923, 2006.
DOI : 10.1021/es052546x

M. Bormans and S. Condie, Modelling the distribution of Anabaena and Melosira in a stratified river weir pool, Hydrobiologia, vol.364, issue.1, pp.3-13, 1997.
DOI : 10.1023/A:1003103706305

M. Bormans, M. Lengronne, L. Brient, and C. Duval, Cylindrospermopsin Accumulation and Release by the Benthic Cyanobacterium Oscillatoria sp. PCC 6506 under Different Light Conditions and Growth Phases, Bulletin of Environmental Contamination and Toxicology, vol.652, issue.8, pp.243-247, 2014.
DOI : 10.1007/s00128-013-1144-y

URL : https://hal.archives-ouvertes.fr/hal-00957621

M. Bormans, P. , F. , L. , F. Hancock et al., Onset and persistence of cyanobacterial blooms in a large impounded tropical river, Australia, Marine and Freshwater Research, vol.55, issue.1, pp.1-15, 2004.
DOI : 10.1071/MF03045

S. R. Carpenter, D. Ludwig, and W. A. Brock, MANAGEMENT OF EUTROPHICATION FOR LAKES SUBJECT TO POTENTIALLY IRREVERSIBLE CHANGE, Ecological Applications, vol.9, issue.3, pp.751-771, 1999.
DOI : 10.1890/1051-0761(1999)009[0772:EVOFES]2.0.CO;2

X. Casamitjana, T. Serra, J. Colomer, C. Baserba, and J. Perez-losada, Effects of the water withdrawal in the stratification patterns of a reservoir, Hydrobiologia, vol.504, issue.1-3, pp.21-28, 2003.
DOI : 10.1023/B:HYDR.0000008504.61773.77

V. Casulli and R. T. Cheng, Semi-implicit finite difference methods for three-dimensional shallow water flow, International Journal for Numerical Methods in Fluids, vol.IV, issue.6, pp.629-648, 1992.
DOI : 10.1002/fld.1650150602

Q. Catherine, W. Susanna, E. Isidora, H. Mark, V. Aurã©lie et al., A review of current knowledge on toxic benthic freshwater cyanobacteria ??? Ecology, toxin production and risk management, Water Research, vol.47, issue.15, pp.5464-5479, 2013.
DOI : 10.1016/j.watres.2013.06.042

A. D. Chapman and C. L. Schelske, RECENT APPEARANCE OF CYLINDROSPERMOPSIS (CYANOBACTERIA) IN FIVE HYPEREUTROPHIC FLORIDA LAKES1, Journal of Phycology, vol.33, issue.2, pp.191-195, 1997.
DOI : 10.1111/j.0022-3646.1997.00191.x

Y. Chen, B. Qin, K. Teubner, and M. T. Dokulil, Long-term dynamics of phytoplankton assemblages: Microcystis-domination in Lake Taihu, a large shallow lake in China, Journal of Plankton Research, vol.25, issue.4, pp.445-453, 2003.
DOI : 10.1093/plankt/25.4.445

R. K. Chiswell, G. R. Shaw, G. Eaglesham, M. J. Smith, R. L. Norris et al., Stability of cylindrospermopsin, the toxin from the cyanobacterium,Cylindrospermopsis raciborskii: Effect of pH, temperature, and sunlight on decomposition, Environmental Toxicology, vol.33, issue.1, pp.155-161, 1999.
DOI : 10.1002/(SICI)1522-7278(199902)14:1<155::AID-TOX20>3.0.CO;2-Z

I. Chorus, Water Safety Plans, Harmful Cyanobacteria, pp.201-227, 2005.
DOI : 10.1007/1-4020-3022-3_9

Z. S. Chu, X. C. Jin, N. Iwami, and Y. H. Inamori, The effect of temperature on growth characteristics and competitions of Microcystis aeruginosa and Oscillatoria mougeotii in a shallow, eutrophic lake simulator system, Hydrobiologia, vol.53, issue.1, pp.217-223, 2007.
DOI : 10.1007/s10750-006-0506-4

S. Cirés, L. Wörmer, J. Timo´n, C. Wiedner, and A. Quesada, Cylindrospermopsin production and release by the potentially invasive cyanobacterium Aphanizomenon ovalisporum under temperature and light gradients, Harmful Algae, vol.10, issue.6, pp.668-675, 2011.
DOI : 10.1016/j.hal.2011.05.002

G. Codd, S. Bell, K. Kaya, C. Ward, K. Beattie et al., Cyanobacterial toxins, exposure routes and human health, European Journal of Phycology, vol.34, issue.4, pp.405-415, 1999.
DOI : 10.1080/09670269910001736462

G. A. Codd, L. F. Morrison, and J. S. Metcalf, Cyanobacterial toxins: risk management for health protection, Toxicology and Applied Pharmacology, vol.203, issue.3, pp.264-272, 2005.
DOI : 10.1016/j.taap.2004.02.016

D. Copetti, G. Tartari, G. Morabito, A. Oggioni, and E. L. , A biogeochemical model of Lake Pusiano (North Italy) and its use in the predictability of phytoplankton blooms: first preliminary results, Journal of Limnology, vol.65, issue.1, pp.59-64, 2006.
DOI : 10.4081/jlimnol.2006.59

L. Cruz-pizarro, A. Basanta, C. Escot, E. Moreno-ostos, and D. George, Temporal and spatial variations in the water quality of El Gergal reservoir, Freshwat Forum, vol.23, pp.62-77, 2005.

Y. Cuypers, B. Vincon-leite, A. Groleau, B. Tassin, and J. Humbert, Impact of internal waves on the spatial distribution of Planktothrix rubescens (cyanobacteria) in an alpine lake, The ISME Journal, vol.28, issue.4, pp.580-589, 2011.
DOI : 10.4319/lo.1987.32.1.0029

URL : https://hal.archives-ouvertes.fr/hal-01208054

T. W. Davis, D. L. Berry, G. L. Boyer, and C. J. Gobler, The effects of temperature and nutrients on the growth and dynamics of toxic and non-toxic strains of Microcystis during cyanobacteria blooms, Harmful Algae, vol.8, issue.5, pp.715-725, 2009.
DOI : 10.1016/j.hal.2009.02.004

I. R. Davison, ENVIRONMENTAL EFFECTS ON ALGAL PHOTOSYNTHESIS: TEMPERATURE, Journal of Phycology, vol.26, issue.1, 1991.
DOI : 10.1111/j.0022-3646.1991.00002.x

D. Figueiredo, D. R. Azeirero, U. M. Esteves, S. M. Goncalves, F. J. Pereira et al., Microcystin-producing blooms???a serious global public health issue, Ecotoxicology and Environmental Safety, vol.59, issue.2, 2004.
DOI : 10.1016/j.ecoenv.2004.04.006

D. Figueiredo, D. R. Reboleira, A. S. Antunes, S. C. Abrantes, N. Azeiteiro et al., The effect of environmental parameters and cyanobacterial blooms on phytoplankton dynamics of a Portuguese temperate Lake, Hydrobiologia, vol.1, issue.12, pp.145-157, 2006.
DOI : 10.1007/s10750-006-0196-y

B. Debele, R. Srinivasan, and J. Y. Parlange, Coupling upland watershed and downstream waterbody hydrodynamic and water quality models (SWAT and CE-QUAL-W2) for better water resources management in complex river basins, Environmental Modeling & Assessment, vol.33, issue.10, pp.135-153, 2008.
DOI : 10.1007/s10666-006-9075-1

P. N. Deliman and J. A. Gerald, Application of the Two-Dimensional Hydrothermal and Water Quality Model, CE-QUAL-W2, to the Chesapeake Bay: Conowingo Reservoir. Lake and Reservoir Management, pp.10-19, 2002.

B. T. Destasio, D. K. Hill, J. M. Kleinhans, N. P. Nibbelink, and J. J. Magnuson, Potential effects of global climate change on small north-temperate lakes: Physics, fish, and plankton, Limnology and Oceanography, vol.41, issue.5, pp.1136-1149, 1996.
DOI : 10.4319/lo.1996.41.5.1136

M. Dignum, H. C. Matthijs, R. Pel, H. J. Laanbroek, and L. R. Mur, Nutrient limitation of freshwater cyanobacteria. Tools to monitor phosphorus limitation at the individual level, Harmful cyanobacteria, pp.65-86, 2005.

. Freshwaters, Analysis of Potential Economic Damages, Environmental Science & Technology, vol.43, pp.12-19

L. N. Domis, J. J. Elser, A. S. Gsell, V. L. Huszar, B. W. Ibelings et al., Plankton dynamics under different climatic conditions in space and time, Freshwater Biology, vol.23, issue.3, pp.463-482, 2013.
DOI : 10.1111/fwb.12053

J. Doummar, M. Massoud, R. Khoury, and M. Khawlie, Optimal Water Resources Management: Case of Lower Litani River, Lebanon, Water Resources Management, vol.22, issue.2, pp.2343-2360, 2009.
DOI : 10.1007/s11269-008-9384-z

O. Hadas, R. Pinkas, E. Delphine, A. Vardi, A. Kaplan et al., Limnological and ecophysiological aspects of Aphanizomenon ovalisporum bloom in Lake Kinneret, Israel, Journal of Plankton Research, vol.21, issue.8, pp.1439-1453, 1999.
DOI : 10.1093/plankt/21.8.1439

O. Hadas, R. Pinkas, N. Malinsky-rushansky, G. Shalev-alon, E. Delphine et al., Physiological variables determined under laboratory conditions may explain the bloom of Aphanizomenon ovalisporum in Lake Kinneret, European Journal of Phycology, vol.37, issue.2, pp.259-267, 2002.
DOI : 10.1017/S0967026202003645

O. Hadas, R. Pinkas, N. Malinsky-rushansky, A. Nishri, A. Kaplan et al., Appearance and establishment of diazotrophic cyanobacteria in Lake Kinneret, Israel, Freshwater Biology, vol.49, issue.6, pp.1214-1227, 2012.
DOI : 10.1111/j.1365-2427.2012.02792.x

G. M. Hallegraeff, A review of harmful algal blooms and their apparent global increase*, Phycologia, vol.32, issue.2, pp.79-99, 1993.
DOI : 10.2216/i0031-8884-32-2-79.1

D. P. Hamilton, G. Schladow, and I. H. Fisher, Controlling the indirect effects of flow diversions on water quality in an Australian reservoir, Environment International, vol.21, issue.5, pp.583-590, 1995.
DOI : 10.1016/0160-4120(95)00061-O

D. P. Hamilton and S. G. Schladow, Prediction of water quality in lakes and reservoirs. Part I ??? Model description, Ecological Modelling, vol.96, issue.1-3, pp.91-110, 1997.
DOI : 10.1016/S0304-3800(96)00062-2

K. I. Harada, I. Ohtani, K. Iwamoto, M. Suzuki, M. F. Watanabe et al., Isolation of cylindrospermopsin from a cyanobacterium Umezakia natans and its screening method, Toxicon, vol.32, issue.1, pp.73-84, 1994.
DOI : 10.1016/0041-0101(94)90023-X

K. I. Harada, K. Tsuji, and M. F. Watanabe, Stability of microcystins from cyanobacteria???III.* Effect of pH and temperature, Phycologia, vol.35, issue.6S, pp.83-88, 1996.
DOI : 10.2216/i0031-8884-35-6S-83.1

K. E. Havens, R. T. James, T. L. East, and V. H. Smith, N:P ratios, light limitation, and cyanobacterial dominance in a subtropical lake impacted by non-point source nutrient pollution, Environmental Pollution, vol.122, issue.3, pp.379-390, 2003.
DOI : 10.1016/S0269-7491(02)00304-4

K. E. Havens, E. J. Phlips, M. F. Cichra, and B. Li, Light availability as a possible regulator of cyanobacteria species composition in a shallow subtropical lake, Freshwater Biology, vol.178, issue.3, pp.547-556, 1998.
DOI : 10.1023/A:1017013208039

M. R. Hipsey, Water quality modelling of west Seti hydropower reservoir using DYRESM-CAEDYM. the university of Western australia, 2007.

H. Imai, K. H. Chang, M. Kusaba, and S. Nakano, Temperature-dependent dominance of Microcystis (Cyanophyceae) species: M. aeruginosa and M. wesenbergii, Journal of Plankton Research, vol.31, issue.2, pp.171-178, 2009.
DOI : 10.1093/plankt/fbn110

H. Imai, K. H. Chang, and S. Nakano, Growth responses of harmful algal species Microcystis (cyanophyceae) under various environmental conditions, Interdisciplinary Studies on Environmental Chemistry-Environmental Research, pp.269-275, 2009.

J. Imberger and J. C. Patterson, A DYNAMIC RESERVOIR SIMULATION MODEL - DYRESM: 5, Transport Models for Inland and Coastal Waters Academic Press, pp.310-361, 1981.
DOI : 10.1016/B978-0-12-258152-6.50014-2

J. Imberger, J. C. Patterson, B. Hebbert, and I. Loh, Dynamics of reservoir of medium size, Journal of Hydraulics Division ASCE, vol.104, pp.725-743, 1978.

J. P. Imberger and J. C. , A DYNAMIC RESERVOIR SIMULATION MODEL - DYRESM: 5, Transport Models for Inland and Coastal Waters, pp.310-361, 1981.
DOI : 10.1016/B978-0-12-258152-6.50014-2

T. Jankowski, D. M. Livingstone, H. Buhrer, R. Forster, and P. Niederhauser, Consequences of the 2003 European heat wave for lake temperature profiles, thermal stability, and hypolimnetic oxygen depletion: Implications for a warmer world, Limnology and Oceanography, vol.51, issue.2, pp.815-819, 2006.
DOI : 10.4319/lo.2006.51.2.0815

S. E. Jørgensen, Overview of the model types available for development of ecological models, Ecological Modelling, vol.215, issue.1-3, pp.3-9, 2008.
DOI : 10.1016/j.ecolmodel.2008.02.041

S. E. Jørgensen, A review of recent developments in lake modelling, Ecological Modelling, vol.221, issue.4, pp.689-692, 2010.
DOI : 10.1016/j.ecolmodel.2009.10.022

S. E. Jørgensen, H. Löffler, W. Rast, and M. Stra?kraba, Lake and reservoir management References 173, 2005.

. Kõiv, . Toomas, and K. Kangro, Resource ratios and phytoplankton species composition in a strongly stratified lake, Lake Verevi, Estonia â? " A Highly Stratified Hypertrophic Lake, pp.123-135, 2005.

A. Konopka and T. D. Brock, Effect of Temperature on Blue-Green Algae (Cyanobacteria) in Lake Mendota, Appl. Environ. Microbiol, vol.36, pp.572-576, 1978.

S. Korfali and M. Jurdi, Speciation of metals in bed sediments and water of Qaraaoun Reservoir, Lebanon, Environmental Monitoring and Assessment, vol.5, issue.211, pp.563-579, 2010.
DOI : 10.1007/s10661-010-1713-z

J. Kuo, W. Lung, C. Yang, W. Liu, M. Yang et al., Eutrophication modelling of reservoirs in Taiwan, Environmental Modelling & Software, vol.21, issue.6, pp.829-844, 2006.
DOI : 10.1016/j.envsoft.2005.03.006

W. Lampert and U. Sommer, Special features of aquatic habitats, Limnoecology, 2007.

E. Lance, L. Brient, A. Carpentier, A. Acou, L. Marion et al., Impact of toxic cyanobacteria on gastropods and microcystin accumulation in a eutrophic lake (Grand-Lieu, France) with special reference to Physa (= Physella) acuta, Science of The Total Environment, vol.408, issue.17, pp.3560-3568, 2010.
DOI : 10.1016/j.scitotenv.2010.04.050

URL : https://hal.archives-ouvertes.fr/hal-00504906

B. Lehner and P. Doll, Development and validation of a global database of lakes, reservoirs and wetlands, Journal of Hydrology, vol.296, issue.1-4, pp.1-22, 2004.
DOI : 10.1016/j.jhydrol.2004.03.028

B. Lehner, C. Reidy-liermann, C. Revenga, C. Vörösmarty, B. Fekete et al., High-resolution mapping of the world's reservoirs and dams for sustainable river-flow management, Frontiers in Ecology and the Environment, vol.65, issue.9, pp.494-502, 2011.
DOI : 10.1016/j.geomorph.2008.09.004

L. Jr and W. M. , A Revised Classification of Lakes Based on Mixing, Canadian Journal of Fisheries and Aquatic Sciences, vol.40, pp.1779-1787, 1983.

R. Li, W. W. Carmichael, S. Brittain, G. K. Eaglesham, G. R. Shaw et al., FIRST REPORT OF THE CYANOTOXINS CYLINDROSPERMOPSIN AND DEOXYCYLINDROSPERMOPSIN FROM RAPHIDIOPSIS CURVATA (CYANOBACTERIA), Journal of Phycology, vol.28, issue.6, pp.1121-1126, 2001.
DOI : 10.1002/(SICI)1522-7278(199902)14:1<167::AID-TOX22>3.0.CO;2-O

M. J. Lilover and A. Stips, The variability of parameters controlling the cyanobacteria bloom biomass in the Baltic Sea, Journal of Marine Systems, vol.74, pp.108-115, 2008.
DOI : 10.1016/j.jmarsys.2008.03.029

J. Liu, T. Dietz, S. R. Carpenter, M. Alberti, C. Folke et al., Complexity of Coupled Human and Natural Systems, Complexity of Coupled Human and Natural Systems, pp.1513-1516, 2007.
DOI : 10.1126/science.1144004

C. J. Lorenzen, DETERMINATION OF CHLOROPHYLL AND PHEO-PIGMENTS: SPECTROPHOTOMETRIC EQUATIONS1, Limnology and Oceanography, vol.12, issue.2, pp.343-346, 1967.
DOI : 10.4319/lo.1967.12.2.0343

F. J. Los, M. T. Villars, and M. W. Van-der-tol, A 3-dimensional primary production model (BLOOM/GEM) and its applications to the (southern) North Sea (coupled physical???chemical???ecological model), Journal of Marine Systems, vol.74, issue.1-2, pp.259-294, 2008.
DOI : 10.1016/j.jmarsys.2008.01.002

M. W. Marsden, Lake restoration by reducing external phosphorus loading: the influence of sediment phosphorus release, Freshwater Biology, vol.19, issue.215, pp.139-162, 1989.
DOI : 10.1016/0043-1354(80)90265-1

C. P. Mcdonald and N. R. Urban, Using a model selection criterion to identify appropriate complexity in aquatic biogeochemical models, Ecological Modelling, vol.221, issue.3, pp.428-432, 2010.
DOI : 10.1016/j.ecolmodel.2009.10.021

G. Mehnert, F. Leunert, S. Cirés, K. D. Jöhnk, J. Rücker et al., Competitiveness of invasive and native cyanobacteria from temperate freshwaters under various light and temperature conditions, Journal of Plankton Research, vol.32, issue.7, pp.1009-1021, 2010.
DOI : 10.1093/plankt/fbq033

URL : https://hal.archives-ouvertes.fr/hal-00585776

V. Messineo, S. Melchiorre, D. Corcia, A. Gallo, P. Bruno et al., Seasonal succession of Cylindrospermopsis raciborskii and Aphanizomenon ovalisporum blooms with cylindrospermopsin occurrence in the volcanic Lake Albano, Central Italy, Environmental Toxicology, vol.25, pp.18-27, 2010.

S. Micheletti, F. Schanz, and A. E. Walsby, The daily integral of photosynthesis by Planktothrix rubescens during summer stratification and autumnal mixing in Lake Zurich, New Phytologist, vol.139, issue.2, pp.233-246, 1998.
DOI : 10.1046/j.1469-8137.1998.00196.x

J. Mieleitner and P. Reichert, Modelling functional groups of phytoplankton in three lakes of different trophic state, Ecological Modelling, vol.211, issue.3-4, pp.279-291, 2008.
DOI : 10.1016/j.ecolmodel.2007.09.010

P. H. Moisander, M. Ochiai, and A. Lincoff, Nutrient limitation of Microcystis aeruginosa in northern California Klamath River reservoirs, Harmful Algae, vol.8, issue.6, pp.889-897, 2009.
DOI : 10.1016/j.hal.2009.04.005

W. Mooij, D. Trolle, E. Jeppesen, G. Arhonditsis, P. Belolipetsky et al., Challenges and opportunities for integrating lake ecosystem modelling approaches, Challenges and opportunities for integrating lake ecosystem modelling approaches, pp.633-667, 2010.
DOI : 10.1007/s10452-010-9339-3

E. Moreno-ostos, L. Cruz-pizarro, A. Basanta-alvés, C. Escot, and D. G. George, Algae in the motion: Spatial distribution of phytoplankton in thermally stratified reservoirs, Limnetica, vol.25, pp.205-216, 2006.

E. Moreno-ostos, L. Cruz-pizarro, A. Basanta, and D. George, The influence of wind-induced mixing on the vertical distribution of buoyant and sinking phytoplankton species, Aquatic Ecology, vol.23, issue.2, pp.271-284, 2009.
DOI : 10.1007/s10452-008-9167-x

E. Moreno-ostos, L. Cruz-pizarro, A. Basanta, and D. G. George, The spatial distribution of different phytoplankton functional groups in a Mediterranean reservoir, Aquatic Ecology, vol.3, issue.1, pp.115-128, 2008.
DOI : 10.1007/s10452-007-9087-1

E. Moreno-ostos, J. A. Elliott, L. Cruz-pizarro, C. Escot, A. Basanta et al., Using a numerical model (PROTECH) to examine the impact of water transfers on phytoplankton dynamics in a Mediterranean reservoir, Limnetica, vol.26, pp.1-11, 2007.

M. Ndong, D. Bird, T. Nguyen-quang, M. De-boutray, A. Zamyadi et al., Estimating the risk of cyanobacterial occurrence using an index integrating meteorological factors: Application to drinking water production, Water Research, vol.56, pp.98-108, 2014.
DOI : 10.1016/j.watres.2014.02.023

URL : https://hal.archives-ouvertes.fr/hal-00967649

A. Nicklisch and J. Kohl, Growth Kinetics of Microcystis aeruginosa (KÜTZ) KÜTZ as a Basis for Modelling its Population Dynamics, 1983.

T. D. Niehaus, S. Kinison, S. Okada, Y. Yeo, S. A. Bell et al., Functional Identification of Triterpene Methyltransferases from Botryococcus braunii Race B, Journal of Biological Chemistry, vol.287, issue.11, pp.8163-8173, 2011.
DOI : 10.1074/jbc.M111.316059

T. Nõges and I. Solovjova, The formation and dynamics of deep bacteriochlorophyll maximum in the temperate and partly meromictic Lake Verevi, Lake Verevi, Estonia â? " A Highly Stratified Hypertrophic Lake, pp.73-81, 2005.

P. J. Oberholster, A. M. Botha, and J. U. Grobbelaar, Microcystis aeruginosa: source of toxic microcystins in drinking water, African Journal of Biotechnology, vol.3, issue.3, pp.159-168, 2004.
DOI : 10.5897/AJB2004.000-2029

R. L. Oliver, FLOATING AND SINKING IN GAS-VACUOLATE CYANOBACTERIA1, Journal of Phycology, vol.30, issue.2, pp.161-173, 1994.
DOI : 10.1111/j.0022-3646.1994.00161.x

R. L. Oliver and G. G. Gnaf, Freshwater blooms The ecology of cyanobacteria. Their diversity in time and space, pp.149-194, 2002.

N. Oreskes, K. Sharder-frechette, and K. Belitz, Verification, Validation, and Confirmation of Numerical Models in the Earth Sciences, Science, vol.263, issue.5147, pp.641-646, 1994.
DOI : 10.1126/science.263.5147.641

H. W. Paerl, P. T. Bland, N. D. Bowles, and M. E. Haibach, Adaptation to High-Intensity, Low-Wavelength Light among Surface Blooms of the Cyanobacterium Microcystis aeruginosa, Appl. Environ. Microbiol, vol.49, pp.1046-1052, 1985.

H. W. Paerl and V. J. Paul, Climate change: Links to global expansion of harmful cyanobacteria, Water Research, vol.46, issue.5, pp.1349-1363, 2012.
DOI : 10.1016/j.watres.2011.08.002

B. Palenik, B. Brahamsha, F. W. Larimer, M. Land, L. Hauser et al., The genome of a motile marine Synechococcus, Nature, vol.424, issue.6952, pp.1037-1042, 2003.
DOI : 10.1038/nature01943

J. S. Parkinson and E. C. Kofoid, Communication Modules in Bacterial Signaling Proteins, Annual Review of Genetics, vol.26, issue.1, pp.71-112, 1992.
DOI : 10.1146/annurev.ge.26.120192.000443

B. C. Patten, D. A. Egloff, and T. H. Richardson, Total ecosystem model for a cove in Lake Texoma System Analysis and Simulation in Ecology, pp.206-423, 1975.

A. Pätynen, J. Elliott, P. Kiuru, J. Sarvala, A. Ventelä et al., Modelling the impact of higher temperature on the phytoplankton of a boreal lake, Boreal Environment Research, vol.19, pp.66-78, 2014.

R. Pereira, A. Soares, R. Ribeiro, and F. Goncalves, Public attitudes towards the restoration and management of Lake Vela, 2005.

C. Pérez-martínez and P. Sánchez-castillo, Temporal occurrence of Ceratium hirundinella in Spanish reservoirs, Hydrobiologia, vol.452, issue.1/3, pp.101-107, 2001.
DOI : 10.1023/A:1011928027819

K. Pettersson, E. Herlitz, and V. Istvánovics, The role of Gloeotrichia echinulata in the transfer of phosphorus from sediments to water in Lake Erken, Hydrobiologia, vol.253, pp.1-3, 1993.

T. Petzoldt and D. Uhlmann, Nitrogen emissions into freshwater ecosystems: is there a need for nitrate elimination in all wastewater treatment plants? Acta hydrochimica et hydrobiologica 34, pp.305-324, 2006.

H. Piha and N. Zampoukas, Review of Methodological Standards Related to the Marine Strategy Framework Directive Criteria on Good Environmental Status. Publications Office of the European Union, pp.10-2788, 2011.

U. Pollingher, Phytoplankton periodicity in a subtropical lake (Lake Kinneret, Israel), Hydrobiologia, vol.9, issue.1, pp.127-138, 1986.
DOI : 10.1007/BF00027236

U. Pollingher and B. Hickel, Dinoflagellate associations in a subtropical lake (Lake Kinneret, Israel), Arch. Hydrobiol, vol.120, pp.267-285, 1991.

R. Porat, B. Teltsch, A. Perelman, and Z. Dubinsky, Diel Buoyancy Changes by the Cyanobacterium Aphanizomenon ovalisporum from a Shallow Reservoir, Journal of Plankton Research, vol.23, issue.7, pp.753-763, 2001.
DOI : 10.1093/plankt/23.7.753

S. Pouria, A. Andrade, J. Barbosa, R. L. Cavalcanti, V. T. Barreto et al., Fatal microcystin intoxication in haemodialysis unit in Caruaru, Brazil, The Lancet, vol.352, issue.9121, pp.21-26, 1998.
DOI : 10.1016/S0140-6736(97)12285-1

K. Preußel, G. Wessel, J. Fastner, and I. Chorus, Response of cylindrospermopsin production and release in Aphanizomenon flos-aquae (Cyanobacteria) to varying light and temperature conditions, Harmful Algae, vol.8, issue.5, pp.645-650, 2009.
DOI : 10.1016/j.hal.2008.10.009

A. Quesada, E. Moreno, D. Carrasco, T. Paniagua, L. Wormer et al., (Cyanobacteria) in a Spanish water reservoir, European Journal of Phycology, vol.9, issue.1, pp.39-45, 2006.
DOI : 10.1111/j.1365-2427.2004.01271.x

F. Recknagel, L. Cetin, and B. Zhang, Process-based simulation library SALMO-OO for lake ecosystems. Part 1: Object-oriented implementation and validation, Ecological Informatics, vol.3, issue.2, pp.170-180, 2008.
DOI : 10.1016/j.ecoinf.2008.04.002

C. S. Reynolds, The Ecology of Phytoplankton, 2006.
DOI : 10.1017/CBO9780511542145

T. Rohrlack, M. Henning, and J. G. Kohl, Mechanisms of the inhibitory effect of the cyanobacterium Microcystis aeruginosa on Daphnia galeata's ingestion rate, Journal of Plankton Research, vol.21, issue.8, pp.1489-1500, 1999.
DOI : 10.1093/plankt/21.8.1489

J. R. Romero, J. P. Antenucci, and J. Imberger, One- and three-dimensional biogeochemical simulations of two differing reservoirs, Ecological Modelling, vol.174, issue.1-2, pp.143-160, 2004.
DOI : 10.1016/j.ecolmodel.2004.01.005

S. Romo, J. Soria, F. Fernandez, Y. Ouahid, and A. Baron-sola, Water residence time and the dynamics of toxic cyanobacteria, Freshwater Biology, vol.69, issue.343, pp.513-522, 2013.
DOI : 10.1111/j.1365-2427.2012.02734.x

M. J. Salençon, Stratification thermique d'un réservoir: le modéle à bilan d'énergie, EOLE. Rapport, vol.31, issue.120, pp.94-95, 1994.

M. J. Salençon, Study of the thermal dynamics of two dammed lakes (Pareloup and Rochebut, France), using the EOLE model, Ecological Modelling, vol.104, issue.1, pp.15-38, 1997.
DOI : 10.1016/S0304-3800(97)00105-1

M. J. Salençon and J. Thébault, Simulation model of a mesotrophic reservoir (Lac de Pareloup, France): melodia, an ecosystem reservoir management model, Ecological Modelling, vol.84, issue.1-3, pp.163-187, 1996.
DOI : 10.1016/0304-3800(94)00141-3

N. Salmaso, F. Buzzi, L. Garibaldi, G. Morabito, and M. Simona, Effects of nutrient availability and temperature on phytoplankton development: a case study from large lakes south of the Alps, Aquatic Sciences, vol.639, issue.3, pp.555-570, 2012.
DOI : 10.1007/s00027-012-0248-5

T. Saloranta, M. Forsius, M. Ja¨rvinen, and L. Arvola, Impacts of projected climate change on the thermodynamics of a shallow and a deep lake in Finland: model simulations and Bayesian uncertainty analysis, Hydrology Research, vol.40, issue.2-3, pp.234-248, 2009.
DOI : 10.2166/nh.2009.030

T. M. Saloranta, Highlighting the model code selection and application process in policy-relevant water quality modelling, Ecological Modelling, vol.194, issue.1-3, pp.316-327, 2006.
DOI : 10.1016/j.ecolmodel.2005.10.031

T. M. Saloranta and T. Andersen, MyLake???A multi-year lake simulation model code suitable for uncertainty and sensitivity analysis simulations, Ecological Modelling, vol.207, issue.1, pp.45-60, 2007.
DOI : 10.1016/j.ecolmodel.2007.03.018

G. Sarazin, C. Quiblier, G. Bertru, L. Brient, C. Vezie et al., First assessment of the toxical risk associated with fresh water cyanobacteria in France; the "EFFLOCYA" research program, pp.315-326, 2002.

O. Sarnelle, and bloom-forming cyanobacteria, Limnology and Oceanography, vol.52, issue.5, pp.2120-2127, 2007.
DOI : 10.4319/lo.2007.52.5.2120

M. A. Schembri, B. A. Neilan, and C. P. Saint, Identification of genes implicated in toxin production in the cyanobacteriumCylindrospermopsis raciborskii, Environmental Toxicology, vol.66, issue.5, pp.413-421, 2001.
DOI : 10.1002/tox.1051

D. W. Schindler, R. E. Hecky, D. L. Findlay, M. P. Stainton, B. R. Parker et al., Eutrophication of lakes cannot be controlled by reducing nitrogen input: Results of a 37-year whole-ecosystem experiment, Proceedings of the National Academy of Sciences 105, pp.11254-11258, 2008.
DOI : 10.1073/pnas.0805108105

A. Schmolke, P. Thorbek, D. L. Deangelis, and V. Grimm, Ecological models supporting environmental decision making: a strategy for the future, Trends in Ecology & Evolution, vol.25, issue.8, pp.479-486, 2010.
DOI : 10.1016/j.tree.2010.05.001

A. M. Segura, C. Kruk, D. Calliari, and H. Fort, Use of a morphology-based functional approach to model phytoplankton community succession in a shallow subtropical lake, Freshwater Biology, vol.169, issue.3, pp.504-512, 2013.
DOI : 10.1111/j.1365-2427.2012.02867.x

M. Seifert, G. Mcgregor, G. Eaglesham, W. Wickramasinghe, and G. Shaw, First evidence for the production of cylindrospermopsin and deoxy-cylindrospermopsin by the freshwater benthic cyanobacterium, Lyngbya wollei (Farlow ex Gomont) Speziale and Dyck, Harmful Algae, vol.6, issue.1, pp.73-80, 2007.
DOI : 10.1016/j.hal.2006.07.001

G. Billen, E. Van-drecht, B. M. Dumont, J. Fekete, . Garnier et al., Global river nutrient export: A scenario analysis of past and future trends, Global Biogeochem. Cycles, vol.24, pp.10-1029, 2010.

K. J. Sene, T. J. March, and A. Hachache, An assessment of the difficulties in quantifying the surface water resources of Lebanon, Hydrological Sciences Journal, vol.9, issue.1, pp.79-96, 1999.
DOI : 10.1023/A:1007952319495

C. Serruya, Lake Kinneret Monographiae Biologicae The Hague, 1978.

C. E. Shannon, A Mathematical Theory of Communication, Bell System Technical Journal, vol.27, issue.3, pp.379-423, 1948.
DOI : 10.1002/j.1538-7305.1948.tb01338.x

G. R. Shaw, A. Sukenik, A. Livne, R. K. Chiswell, M. J. Smith et al., Blooms of the cylindrospermopsin containing cyanobacterium,Aphanizomenon ovalisporum (Forti), in newly constructed lakes, Queensland, Australia, Blooms of the cylindrospermopsin containing cyanobacterium, Aphanizomenon ovalisporum (Forti), in newly constructed lakes, pp.167-177, 1999.
DOI : 10.1002/(SICI)1522-7278(199902)14:1<167::AID-TOX22>3.0.CO;2-O

A. M. Sheela, J. Letha, and S. Joseph, Environmental status of a tropical lake system, Environmental Monitoring and Assessment, vol.33, issue.2, pp.427-449, 2011.
DOI : 10.1007/s10661-010-1797-5

B. S. Sherman, I. T. Webster, G. J. Jones, and R. L. Oliver, dominance in a turbid river weir pool, Limnology and Oceanography, vol.43, issue.8, pp.1902-1915, 1998.
DOI : 10.4319/lo.1998.43.8.1902

T. Silva, Suivi et modélisation de la dynamique des cyanobactéries dans les lacs urbains au sein de leur bassin versant, 2014.

T. Silva, B. Vinçon-leite, B. Lemaire, B. Tassin, G. Petrucci et al., Towards an integrated modelling of urban receiving water bodies: coupling cyanobacteria dynamics and watershed modelling in a tropical urban lake, Proceedings of 9th International Conference on Urban Drainage Modelling, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00805943

K. Slim, Contribution to the study of the flora of the basin of the Litani basin, Leb. Sci. Res. Report, vol.1, pp.65-73, 1996.

K. Slim, A. Atoui, G. Elzein, and M. Temsah, Effets des facteurs environementaux sur la qualite de l'eau et la proliferation toxique des cyanobacteries du lac Karaoun (Liban), Larhyss Journal, vol.10, pp.29-43, 2012.

K. Slim, A. Fadel, A. Atoui, B. J. Lemaire, B. Vinçon-leite et al., Global warming as a driving factor for cyanobacterial blooms in Lake Karaoun, Lebanon, Desalination and Water Treatment, vol.409, issue.10, pp.1-8, 2013.
DOI : 10.1890/01-5345

URL : https://hal.archives-ouvertes.fr/hal-00845813

M. J. Smith, G. R. Shaw, G. K. Eaglesham, L. Ho, and J. D. Brookes, Elucidating the factors influencing the biodegradation of cylindrospermopsin in drinking water sources, Environmental Toxicology, vol.53, issue.3, pp.413-421, 2008.
DOI : 10.1002/tox.20356

V. Smith, Eutrophication of freshwater and coastal marine ecosystems a global problem, Environmental Science and Pollution Research, vol.10, issue.2, pp.126-139, 2003.
DOI : 10.1065/espr2002.12.142

V. H. Smith and S. J. Benne, Nitrogen: phosphorus ratios and phytoplankton community structure in lakes, Archiv fur Hydrobiologie, vol.146, pp.37-53, 1999.

V. H. Smith, V. J. Bierman, B. L. Jones, and K. E. Havens, Historical trends in the Lake Okeechobee ecosystem IV. Nitrogen:phosphorus ratios, cyanobacterial dominance, and nitrogen fixation potential, Archiv fur Hydrobiologie, vol.107, pp.71-88, 1995.

V. H. Smith and D. W. Schindler, Eutrophication science: where do we go from here?, Trends in Ecology & Evolution, vol.24, issue.4, pp.201-207, 2009.
DOI : 10.1016/j.tree.2008.11.009

U. Sommer, R. Adrian, L. De-senerpont-domis, J. J. Elser, U. Gaedke et al., Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession, Annual Review of Ecology, Evolution, and Systematics, vol.43, issue.1, pp.429-448, 2012.
DOI : 10.1146/annurev-ecolsys-110411-160251

U. Sommer and Z. M. Gliwicz, in tropical Lake Cahora Bassa (Mozambique), Limnology and Oceanography, vol.31, issue.3, pp.650-653, 1986.
DOI : 10.4319/lo.1986.31.3.0650

U. Sommer, Z. M. Gliwicz, W. Lampert, and A. Duncan, The PEG-model of seasonal succession of planktonic events in freshwater, Archiv fur Hydrobiologie, vol.106, pp.433-471, 1986.

B. Sotton, J. Guillard, O. Anneville, M. Marechal, O. Savichtcheva et al., Trophic transfer of microcystins through the lake pelagic food web: Evidence for the role of zooplankton as a vector in fish contamination. Science of The Total Environment, pp.466-467, 2014.

F. Soulignac, B. Lemaire, B. Tassin, T. Vinçon-leite, and B. , On the prediction of starting point and expansion of phytoplankton bloom in shallow urban lakes, Proceedings of 17th Workshop on Physical Processes in Natural Waters, 2014.

B. Vinçon-leite, B. J. Lemaire, V. Khac, and B. Tassin, Long-term temperature evolution in a deep sub-alpine lake, Lake Bourget, France: how a one-dimensional model improves its trend assessment, Hydrobiologia, vol.244, issue.0, pp.1-16, 2014.
DOI : 10.1007/s10750-014-1818-4

C. Wagner and R. Adrian, Cyanobacteria dominance: Quantifying the effects of climate change, Limnology and Oceanography, vol.54, issue.6part2, pp.2460-2468, 2009.
DOI : 10.4319/lo.2009.54.6_part_2.2460

A. E. Walsby, C. S. Reynolds, R. L. Oliver, J. , and K. , The role of gas vacuoles and carbohydrates content in the buoyancy and vertical distribution of Anabaena minutissima in Lake Rotongaio, Ergeb Limnol, vol.32, pp.1-25, 1989.

W. Wang, Y. Liu, and Z. Yang, Combined effects of nitrogen content in media and Ochromonas sp. grazing on colony formation of cultured Microcystis aeruginosa, Journal of Limnology, vol.69, issue.2, pp.193-198, 2010.
DOI : 10.4081/jlimnol.2010.193

M. F. Watanabe and S. Oishi, Effects of Environmental Factors on Toxicity of a Cyanobacterium (Microcystis aeruginosa) under Culture Conditions, Appl. Environ. Microbiol, vol.49, pp.1342-1344, 1985.

C. J. Watras and A. L. Baker, Detection of planktonic cyanobacteria by tandem in vivo fluorometry, Hydrobiologia, vol.7, issue.1, pp.77-84, 1988.
DOI : 10.1007/BF00007935

M. Watson, Phase I interim environmental impact assessment for the Awali-Beirut water conveyor, Contract No. 6682. CDR, Council for Development and Reconstruction, 1998.

S. Weinberger and M. Vetter, Using the hydrodynamic model DYRESM based on results of a regional climate model to estimate water temperature changes at Lake Ammersee, Ecological Modelling, vol.244, pp.38-48, 2012.
DOI : 10.1016/j.ecolmodel.2012.06.016

A. Fadel, Succession of phytoplankton groups in Karaoun reservoir
URL : https://hal.archives-ouvertes.fr/hal-00806157

J. Bruno, A. Lemaire, K. Atoui, B. Slim, B. Vinçon-leite et al., Domaine de Chamarande (France), pp.10-12, 2012.

K. Slim, A. Atoui, and A. Fadel, Impact du dérèglement climatique sur la qualité de l'eau et la prolifération toxique des cyanobactéries du lac Karaoun (Liban), WATMED 6. 6éme Conférence Internationale, pp.10-12

B. J. Fadel, . B. Lemaire, and . Vinçon-leite, A coupled hydrodynamic biological model for cyanobacteria dynamics in reservoirs 11 th edition of Word Wide Workshop for Young Environmental Scientists (YES) Paris (France) (Article) ? " A simplified biogeochemical model for a warning system on reservoir. Application to Lake Grangent, 2011.