G. Schull, Dynamique d'autoassemblages moleculaires bidimensionnels, 2006.

J. Lehn, La chimie supramoléculaire, 1997.

A. Rochefort, Y. Makoudi, A. Maillard, J. Jeannoutot, J. Blier et al., Anisotropic growth of the thiophene-based layer on Si(111)???B, Chemical Communications, vol.83, issue.41, pp.5484-5486, 2014.
DOI : 10.1039/c4cc01674b

URL : https://hal.archives-ouvertes.fr/hal-00983037

S. V. Snegir, O. L. Kapitanchuk, E. Lacaze, and A. Marchenko, STM Study of Self-Organization of 10CB Molecules on Au(111) Surface, Molecular Crystals and Liquid Crystals, vol.589, issue.1, pp.90-95, 2014.
DOI : 10.1103/PhysRevB.65.045414

URL : https://hal.archives-ouvertes.fr/hal-01238947

N. Katsonis, E. Lacaze, and B. L. Feringa, Molecular chirality at fluid/solid interfaces: expression of asymmetry in self-organised monolayers, Journal of Materials Chemistry, vol.14, issue.18, pp.2065-2073, 2008.
DOI : 10.1039/b718170a

URL : https://hal.archives-ouvertes.fr/hal-00423989

S. V. Snegir, A. A. Marchenko, P. Yu, F. Maurel, O. L. Kapitanchuk et al., STM Observation of Open- and Closed-Ring Forms of Functionalized Diarylethene Molecules Self-Assembled on a Au(111) Surface, The Journal of Physical Chemistry Letters, vol.2, issue.19, pp.2433-2436, 2011.
DOI : 10.1021/jz200875c

URL : https://hal.archives-ouvertes.fr/hal-00648991

B. Zappone, E. Lacaze, H. Hayeb, M. Goldmann, N. Boudet et al., Self-ordered arrays of linear defects and virtual singularities in thin smectic-A films, Soft Matter, vol.39, issue.3, pp.1161-1167, 2011.
DOI : 10.1039/C0SM00747A

URL : https://hal.archives-ouvertes.fr/hal-01222998

M. G. Silly, S. Blanchandin, F. Sirotti, F. Lux, S. Chevreux et al., Evidence of Mixed-Valence Hydrated Europium-Chloride Phase in Vacuum by Means of Optical and Electronic Spectroscopies, The Journal of Physical Chemistry C, vol.117, issue.19, pp.9766-9771, 2013.
DOI : 10.1021/jp312500f

URL : https://hal.archives-ouvertes.fr/cea-01478836

C. Pereira-nabais, J. ?wiatowska, A. Chagnes, A. Gohier, S. Zanna et al., Insight into the Solid Electrolyte Interphase on Si Nanowires in Lithium-Ion Battery: Chemical and Morphological Modifications upon Cycling, The Journal of Physical Chemistry C, vol.118, issue.6, pp.2919-2928, 2014.
DOI : 10.1021/jp409762m

J. V. Barth, Molecular Architectonic on Metal Surfaces, Annual Review of Physical Chemistry, vol.58, issue.1, pp.375-407, 2007.
DOI : 10.1146/annurev.physchem.56.092503.141259

J. V. Barth, Transport of adsorbates at metal surfaces: from thermal migration to hot precursors, Surface Science Reports, vol.40, issue.3-5, pp.75-149, 2000.
DOI : 10.1016/S0167-5729(00)00002-9

L. J. Lauhon and W. Ho, Single molecule thermal rotation and diffusion: Acetylene on Cu(001), The Journal of Chemical Physics, vol.111, issue.13, pp.5633-5636, 1999.
DOI : 10.1063/1.479863

N. Pottier, Physique statistique hors d'équilibre, EDP Sciences CNRS Editions, 2007.

W. Xiao, X. Feng, P. Ruffieux, O. Groning, K. Mullen et al., Self-Assembly of Chiral Molecular Honeycomb Networks on Au(111), Self-assembly of chiral molecular honeycomb networks on Au, pp.8910-8912, 2008.
DOI : 10.1021/ja7106542

H. Liang, Y. He, Y. Ye, X. Xu, F. Cheng et al., Two-dimensional molecular porous networks constructed by surface assembling, Coordination Chemistry Reviews, vol.253, issue.23-24, pp.2959-2979, 2009.
DOI : 10.1016/j.ccr.2009.07.028

L. Grill, M. Dyer, L. Lafferentz, M. Persson, M. V. Peters et al., Nano-architectures by covalent assembly of molecular building blocks, Nature Nanotechnology, vol.128, issue.11, pp.687-691, 2007.
DOI : 10.1038/nnano.2007.346

S. Stepanow, N. Lin, D. Payer, U. Schlickum, F. Klappenberger et al., Surface-Assisted Assembly of 2D Metal???Organic Networks That Exhibit Unusual Threefold Coordination Symmetry, Angewandte Chemie International Edition, vol.23, issue.5, pp.710-713, 2007.
DOI : 10.1002/anie.200603644

M. A. Lingenfelder, H. Spillmann, A. Dmitriev, S. Stepanow, N. Lin et al., Towards Surface-Supported Supramolecular Architectures: Tailored Coordination Assembly of 1,4-Benzenedicarboxylate and Fe on Cu(100), Chemistry - A European Journal, vol.10, issue.8, pp.1913-1919, 2004.
DOI : 10.1002/chem.200305589

Y. Makoudi, F. Palmino, M. Arab, E. Duverger, and F. Chérioux, Complete Supramolecular Self-Assembled Adlayer on a Silicon Surface at Room Temperature, Journal of the American Chemical Society, vol.130, issue.21, pp.6670-6671, 2008.
DOI : 10.1021/ja8001259

URL : https://hal.archives-ouvertes.fr/hal-00482078

G. Pawin, K. L. Wong, K. Kwon, and L. Bartels, A homomolecular porous network at a Cu(111) surface. Science, pp.961-962, 2006.

D. Hosson and P. Rudolf, Selective immobilization of nanoparticles on surfaces by molecular recognition using simple multiple H-bonding functionalities, Advanced Functional Materials, vol.17, pp.2045-2052, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00450724

F. Silly, A. Q. Shaw, M. R. Castell, G. A. Briggs, M. Mura et al., Melamine Structures on the Au(111) Surface, Melamine structures on the Au(111) surface, pp.11476-11480, 2008.
DOI : 10.1021/jp8033769

A. Dmitriev, N. Lin, J. Weckesser, J. V. Barth, and K. Kern, Supramolecular Assemblies of Trimesic Acid on a Cu(100) Surface, The Journal of Physical Chemistry B, vol.106, issue.27, pp.6907-6912, 2002.
DOI : 10.1021/jp014214u

F. Silly, A. Q. Shaw, M. R. Castell, and G. A. Briggs, A chiral pinwheel supramolecular network driven by the assembly of PTCDI and melamine, Chemical Communications, vol.111, issue.16, pp.1907-1909, 2008.
DOI : 10.1039/b715658h

A. D. Sauvage, K. Vita, and . Kern, 2D supramolecular assemblies of benzene-1,3,5- triyl-tribenzoic acid: Temperature-induced phase transformations and hierarchical organization with macrocyclic molecules, Journal of the American Chemical Society, vol.128, pp.15644-15651, 2006.

D. Payer, A. Comisso, A. Dmitriev, T. Strunskus, N. Lin et al., Ionic Hydrogen Bonds Controlling Two-Dimensional Supramolecular Systems at a Metal Surface, Chemistry - A European Journal, vol.87, issue.14, pp.3900-3906, 2007.
DOI : 10.1002/chem.200601325

F. Silly, A. Q. Shaw, K. Porfyrakis, G. A. Brigg, and M. R. Castell, Pairs and heptamers of C 70 molecules ordered via PTCDI-melamine supramolecular networks, Applied Physics Letters, vol.91, pp.1-3, 2007.

M. Stöhr, M. Wahl, C. H. Galka, T. Riehm, T. A. Jung et al., Controlling Molecular Assembly in Two Dimensions: The Concentration Dependence of Thermally Induced 2D Aggregation of Molecules on a Metal Surface, Angewandte Chemie International Edition, vol.392, issue.45, pp.7394-7398, 2005.
DOI : 10.1002/anie.200502316

Y. Wang, S. Fabris, T. W. White, F. Pagliuca, P. Moras et al., Varying molecular interactions by coverage in supramolecular surface chemistry, Chem. Commun., vol.130, issue.4, pp.534-536, 2012.
DOI : 10.1039/C1CC14497A

T. Yokoyama, S. Yokoyama, T. Kamikado, Y. Okuno, and S. Mashiko, Selective assembly on a surface of supramolecular aggregates with controlled size and shape, Nature, vol.77, issue.6856, pp.619-621, 2001.
DOI : 10.1038/35098059

J. V. Barth, H. Brune, and G. Ertl, Scanning tunneling microscopy observations on the reconstructed Au(111) surface: Atomic structure, long-range superstructure, rotational domains, and surface defects, Physical Review B, vol.42, issue.15, pp.9307-9318, 1990.
DOI : 10.1103/PhysRevB.42.9307

U. Harten, A. M. Lahee, J. Peter-toennies, and C. Wöll, Observation of a Soliton Reconstruction of Au(111) by High-Resolution Helium-Atom Diffraction, Physical Review Letters, vol.54, issue.24, pp.2619-2622, 1985.
DOI : 10.1103/PhysRevLett.54.2619

C. Wöll, S. Chiang, R. J. Wilson, and P. H. , Determination of atom positions at stacking-fault dislocations on Au(111) by scanning tunneling microscopy, Physical Review B, vol.39, issue.11, pp.7988-7991, 1988.
DOI : 10.1103/PhysRevB.39.7988

F. Silly, A. Q. Shaw, G. A. Brigg, and M. R. Castell, Epitaxial ordering of a perylenetetracarboxylic diimide-melamine supramolecular network driven by the Au(111)-(22x ? 3) reconstruction, Applied Physics Letters, vol.92, pp.1-3, 2008.

J. A. Theobald, N. S. Oxtoby, M. A. Phillips, N. R. Champness, and P. H. Beton, Controlling molecular deposition and layer structure with supramolecular surface assemblies, Nature, vol.424, issue.6952, pp.1029-1031, 2003.
DOI : 10.1038/nature01915

B. Baris, J. Jeannoutot, V. Luzet, F. Palmino, A. Rochefort et al., Noncovalent Bicomponent Self-Assemblies on a Silicon Surface, ACS Nano, vol.6, issue.8, pp.6905-6911, 2012.
DOI : 10.1021/nn301827e

URL : https://hal.archives-ouvertes.fr/hal-00736798

D. Bonifazi, H. Spillmann, A. Kiebele, M. De-wild, P. Seiler et al., Supramolecular Patterned Surfaces Driven by Cooperative Assembly of C60 and Porphyrins on Metal Substrates, Angewandte Chemie International Edition, vol.43, issue.36, pp.4759-4763, 2004.
DOI : 10.1002/anie.200460562

L. Sanchez, R. Otero, J. M. Gallego, R. Miranda, and N. Martin, Ordering Fullerenes at the Nanometer Scale on Solid Surfaces, Chemical Reviews, vol.109, issue.5, pp.2081-2091, 2009.
DOI : 10.1021/cr800441b

M. Stöhr, M. Wahl, H. Spillmann, L. H. Gade, and T. A. Jung, Lateral Manipulation for the Positioning of Molecular Guests within the Confinements of a Highly Stable Self-Assembled Organic Surface Network, Small, vol.102, issue.8, pp.1336-1340, 2007.
DOI : 10.1002/smll.200700099

E. Mena-osteritz and P. Bäuerle, Complexation of C60 on a Cyclothiophene Monolayer Template, Advanced Materials, vol.29, issue.4, pp.447-451, 2006.
DOI : 10.1002/adma.200501575

D. R. Zahn, G. N. Gavrila, and G. Salvan, Electronic and Vibrational Spectroscopies Applied to Organic/Inorganic Interfaces, ChemInform, vol.107, issue.29, pp.1161-1232, 2007.
DOI : 10.1002/chin.200729276

J. B. Gustafsson, H. M. Zhang, E. Moons, and S. O. Johansson, Electron spectroscopy studies of PTCDA on, Physical Review B, vol.75, issue.111, pp.1-10, 2007.

A. P. Dementjev, A. De-graaf, M. C. Van-de-sanden, K. I. Maslakov, A. V. Naumkin et al., X-Ray photoelectron spectroscopy reference data for identification of the C3N4 phase in carbon???nitrogen films, Diamond and Related Materials, vol.9, issue.11, pp.1904-1907, 2000.
DOI : 10.1016/S0925-9635(00)00345-9

L. Cao, Y. Wang, T. Chen, W. Zhang, X. Yu et al., Charge transfer dynamics of 310-perylene-tetracarboxylicdianhydride molecules on Au(111) probed by resonant photoemission spectroscopy, Journal of Chemical Physics, vol.49, issue.135, pp.1-7, 2011.

M. Mura, X. Sun, F. Silly, H. T. Jonkman, G. A. Briggs et al., Experimental and theoretical analysis of H-bonded supramolecular assemblies of PTCDA molecules, Physical Review B, vol.81, issue.19, pp.1-11, 2010.
DOI : 10.1103/PhysRevB.81.195412

K. Glockler, C. Seidel, A. Soukopp, M. Sokolowski, E. Umbach et al., Highly ordered structures and submolecular scanning tunnelling microscopy contrast of PTCDA and DM-PBDCI monolayers on Ag(111) and Ag(110), Surface Science, vol.405, issue.1, pp.1-20, 1998.
DOI : 10.1016/S0039-6028(97)00888-1

V. Y. Aristov, O. V. Molodtsova, V. Maslyuk, D. V. Vyalikh, V. M. Zhilin et al., Electronic structure of pristine CuPc: Experiment and calculations, Applied Surface Science, vol.254, issue.1, pp.20-25, 2007.
DOI : 10.1016/j.apsusc.2007.07.096

P. Vilmercati, D. Cvetko, A. Cossaro, and A. Morgante, Heterostructured organic interfaces probed by resonant photoemission, Surface Science, vol.603, issue.10-12, pp.1542-1556, 2009.
DOI : 10.1016/j.susc.2008.11.050

A. Föhlisch, P. Feulner, F. Hennies, A. Fink, D. Menzel et al., Direct observation of electron dynamics in the attosecond domain, Nature, vol.65, issue.7049, pp.373-376, 2005.
DOI : 10.1103/PhysRevB.59.10935

W. Chen, L. Wang, C. Huang, T. T. Lin, X. Y. Gao et al., Effect of Functional Group (Fluorine) of Aromatic Thiols on Electron Transfer at the Molecule???Metal Interface, Journal of the American Chemical Society, vol.128, issue.3, pp.935-939, 2006.
DOI : 10.1021/ja056324a

C. J. Chen, Introduction to Scanning Tunneling Microscopy, 1993.

B. Heinrich, Tunneling spectroscopy of nanoscale objects: from metallic islands to single atoms and molecules, 2010.

J. A. Appelbaum, W. F. Brinkmann, E. Jouguelet, and C. Dennis, Theory of Many-Body Effects in Tunneling, Physical Review, vol.186, issue.2, pp.464-470, 1969.
DOI : 10.1103/PhysRev.186.464

C. Mathieu, Approche intégrée "Spectroscopies électroniques et Calculs ab-initio d'états de coeur excités" des modes d'adsorption de l'ammoniac et de diamines sur la surface Si(001)-2x1, 2009.

C. R. Brundle, Elucidation of surface structure and bonding by photoelectron spectroscopy? Surface Science, pp.99-136, 1975.

J. Rault, Chemical and Electronic Structure of the Metal-Ferroelectric Interface as a Function of Ferroelectric Polarization, 2013.
URL : https://hal.archives-ouvertes.fr/tel-00840865

L. Caillard, O. Seitz, P. M. Campbell, R. P. Doherty, A. Lamic-humblot et al., Gold Nanoparticles on Oxide-Free Silicon???Molecule Interface for Single Electron Transport, Langmuir, vol.29, issue.16, pp.5066-5073, 2013.
DOI : 10.1021/la304971v

URL : https://hal.archives-ouvertes.fr/hal-00910966

M. R. Tchalala, H. Enriquez, A. J. Mayne, A. Kara, S. Roth et al., Formation of one-dimensional self-assembled silicon nanoribbons on Au(110)- (2x1) Applied Physics Letters, pp.1-5, 2013.

M. Kazzi, Etude par photoemission (XPS et XPD) d'heterostructure d'oxydes fonctionnels épitaxiés sur silicium, 2007.

J. Taborski, P. Väterlein, H. Dietz, U. Zimmermann, and E. Umbach, NEXAFS investigations on ordered adsorbate layers of large aromatic molecules, Journal of Electron Spectroscopy and Related Phenomena, vol.75, pp.129-147, 1995.
DOI : 10.1016/0368-2048(95)02397-6

J. Schnadt, P. A. Brühwiler, L. Patthey, J. N. Oshea, S. Södergren et al., Experimental evidence for sub-3-fs charge transfer from an aromatic adsorbate to a semiconductor, Nature, vol.200, issue.6898, pp.620-623, 2002.
DOI : 10.1021/jp001085t

S. Yu, S. Ahmadi, M. Zuleta, H. Tian, and K. Schulte, Adsorption geometry, molecular interaction, and charge transfer of triphenylamine-based dye on rutile TiO 2 (110), Journal of Chemical Physics, vol.133, pp.1-11, 2010.

J. Filhol, Pleins feux sur la lumière synchrotron. DocSciences, 2010.

C. Li and H. Wonneberger, Perylene Imides for Organic Photovoltaics: Yesterday, Today, and Tomorrow, Advanced Materials, vol.13, issue.10, pp.613-636, 2012.
DOI : 10.1002/adma.201104447

H. Yang, A. J. Mayne, G. Comtet, G. Dujardin, Y. Kuk et al., STM imaging, spectroscopy and manipulation of a self-assembled PTCDI monolayer on epitaxial graphene, Physical Chemistry Chemical Physics, vol.486, issue.14, pp.4939-4946, 2013.
DOI : 10.1039/c3cp42591f

M. Yu, W. Xu, N. Kalashnyk, Y. Benjalal, S. Nagarajan et al., From zero to two dimensions: supramolecular nanostructures formed from perylene-3, diimide (PTCDI) and Ni on the Au(111) surface through the interplay between hydrogen-bonding and electrostatic metalorganic interactions, pp.10-903, 2012.

A. Herrmann and K. Müllen, From Industrial Colorants to Single Photon Sources and Biolabels: The Fascination and Function of Rylene Dyes, Chemistry Letters, vol.35, issue.9, pp.978-985, 2006.
DOI : 10.1246/cl.2006.978

Y. Avlasevich, C. Li, and K. Müllen, Synthesis and applications of core-enlarged perylene dyes, Journal of Materials Chemistry, vol.20, issue.2, pp.3814-3826, 2010.
DOI : 10.1039/c000137f

S. Yagai, M. Usui, T. Seki, H. Murayama, Y. Kikkawa et al., Supramolecularly Engineered Perylene Bisimide Assemblies Exhibiting Thermal Transition from Columnar to Multilamellar Structures, Journal of the American Chemical Society, vol.134, issue.18, pp.7983-7994, 2012.
DOI : 10.1021/ja302574b

I. Willerich and F. Gröhn, Molecular Structure Encodes Nanoscale Assemblies: Understanding Driving Forces in Electrostatic Self-Assembly, Journal of the American Chemical Society, vol.133, issue.50, pp.20341-20356, 2011.
DOI : 10.1021/ja207565m

N. Tasios, C. Grigoriadis, M. R. Hansen, H. Wonneberger, C. Li et al., Self-Assembly, Dynamics, and Phase Transformation Kinetics of Donor???Acceptor Substituted Perylene Derivatives, Journal of the American Chemical Society, vol.132, issue.21, pp.7478-7487, 2010.
DOI : 10.1021/ja102150g

C. You and F. Würthner, Self-Assembly of Ferrocene-Functionalized Perylene Bisimide Bridging Ligands with Pt(II) Corner to Electrochemically Active Molecular Squares, Journal of the American Chemical Society, vol.125, issue.32, pp.9716-9725, 2003.
DOI : 10.1021/ja029648x

J. Van-herrikhuyzen, A. Syamakumari, A. P. Schenning, and E. W. Meijer, -phenylene vinylene)s, Journal of the American Chemical Society, vol.126, issue.32, pp.10021-10027, 2004.
DOI : 10.1021/ja048819q

Q. H. Wang and M. C. Hersam, Room-temperature molecular-resolution characterization of self-assembled organic monolayers on epitaxial graphene, Nature Chemistry, vol.75, issue.10, pp.206-211, 2009.
DOI : 10.1038/nchem.212

H. Huang, S. Chen, X. Gao, W. Chen, and A. T. Wee, Structural and Electronic Properties of PTCDA Thin Films on Epitaxial Graphene, ACS Nano, vol.3, issue.11, pp.3431-3436, 2009.
DOI : 10.1021/nn9008615

C. Weiss, C. Wagner, R. Temirov, and F. S. Tautz, Direct Imaging of Intermolecular Bonds in Scanning Tunneling Microscopy, Journal of the American Chemical Society, vol.132, issue.34, pp.11864-11865, 2010.
DOI : 10.1021/ja104332t

R. Temirov, S. Soubatch, O. Neucheva, A. C. Lassise, and F. S. Tautz, A novel method achieving ultra-high geometrical resolution in scanning tunnelling microscopy, New Journal of Physics, vol.10, issue.5, pp.1-11, 2008.
DOI : 10.1088/1367-2630/10/5/053012

J. Lobo-checa, M. Matena, K. Müller, J. H. Dil, F. Meier et al., Band Formation from Coupled Quantum Dots Formed by a Nanoporous Network on a Copper Surface, Science, vol.325, issue.5938, pp.300-303, 2009.
DOI : 10.1126/science.1175141

R. Madueno, M. T. Raisanen, C. Silien, and M. Buck, Functionalizing hydrogen-bonded surface networks with self-assembled monolayers, Nature, vol.497, issue.7204, pp.618-621, 2008.
DOI : 10.1038/nature07096

M. E. Canas-ventura, K. Aït-mansour, P. Ruffieux, R. Rieger, K. Müllen et al., Complex Interplay and Hierarchy of Interactions in Two-Dimensional Supramolecular Assemblies, ACS Nano, vol.5, issue.1, pp.457-469, 2011.
DOI : 10.1021/nn102164g

C. Silien, M. T. Räisänen, and M. Buck, A Supramolecular Network as Sacrificial Mask for the Generation of a Nanopatterned Binary Self-Assembled Monolayer, Small, vol.111, issue.3, pp.391-394, 2010.
DOI : 10.1002/smll.200901909

P. E. Keivanidis, I. A. Howard, and R. H. Friend, Intermolecular Interactions of Perylene diimides in Photovoltaic Blends of Fluorene Copolymers: Disorder Effects on Photophysical Properties, Film Morphology and Device Efficiency, Advanced Functional Materials, vol.15, issue.512, pp.3189-3202, 2008.
DOI : 10.1002/adfm.200800356

J. P. Schmidtke, R. H. Friend, M. Kastler, and K. Müllen, Control of morphology in efficient photovoltaic diodes from discotic liquid crystals, The Journal of Chemical Physics, vol.124, issue.17, pp.1-6, 2006.
DOI : 10.1063/1.2194536

J. E. Bullock, R. Carmieli, S. M. Mickley, J. Vura-weis, and M. R. Wasielewski, Photoinitiated Charge Transport through ??-Stacked Electron Conduits in Supramolecular Ordered Assemblies of Donor???Acceptor Triads, Journal of the American Chemical Society, vol.131, issue.33, pp.11919-11929, 2009.
DOI : 10.1021/ja903903q

M. J. Ahrens, L. E. Sinks, B. Rybtchinski, W. Liu, B. A. Jones et al., Self-Assembly of Supramolecular Light-Harvesting Arrays from Covalent Multi-Chromophore Perylene-3,4:9,10-bis(dicarboximide) Building Blocks, Journal of the American Chemical Society, vol.126, issue.26, pp.10-8284, 2004.
DOI : 10.1021/ja039820c

C. Barraud, P. Seneor, R. Mattana, S. Fusil, K. Bouzehouane et al., Unravelling the role of the interface for spin injection into organic semiconductors, Nature Physics, vol.3, issue.8, pp.615-620, 2010.
DOI : 10.1038/nphys1688

D. Niedzialek, V. Lemaur, D. Dudenko, J. Shu, M. R. Hansen et al., Probing the Relation Between Charge Transport and Supramolecular Organization Down to ??ngstr??m Resolution in a Benzothiadiazole-Cyclopentadithiophene Copolymer, Advanced Materials, vol.122, issue.13, pp.1939-1947, 2013.
DOI : 10.1002/adma.201201058

P. J. Skabara, J. Arlin, and Y. H. Geerts, Close Encounters of the 3D Kind - Exploiting High Dimensionality in Molecular Semiconductors, Advanced Materials, vol.24, issue.13, pp.1948-1954, 2013.
DOI : 10.1002/adma.201200862

M. Knupfer and H. Peisert, Electronic properties of interfaces between model organic semiconductors and metals, physica status solidi (a), vol.201, issue.6, pp.1055-1074, 2004.
DOI : 10.1002/pssa.200304332

J. Hwang, A. Wan, and A. Kahn, Energetics of metal???organic interfaces: New experiments and assessment of the field, Materials Science and Engineering: R: Reports, vol.64, issue.1-2, pp.1-31, 2009.
DOI : 10.1016/j.mser.2008.12.001

H. Ishii, K. Sugiyama, E. Ito, and K. Seki, Energy Level Alignment and Interfacial Electronic Structures at Organic/Metal and Organic/Organic Interfaces, Advanced Materials, vol.11, issue.8, pp.605-625, 1999.
DOI : 10.1002/(SICI)1521-4095(199906)11:8<605::AID-ADMA605>3.0.CO;2-Q

X. Crispin, Interface dipole at organic/metal interfaces and organic solar cells, Solar Energy Materials and Solar Cells, vol.83, issue.2-3, pp.147-168, 2004.
DOI : 10.1016/j.solmat.2004.02.022

S. Braun, W. R. Salaneck, and M. Fahlman, Energy-Level Alignment at Organic/Metal and Organic/Organic Interfaces, Advanced Materials, vol.321, issue.43, pp.1450-1472, 2009.
DOI : 10.1002/adma.200802893

M. Mura, A. Gulans, T. Thonhauser, and L. N. Kantorovich, Role of van der Waals interaction in forming molecule-metal junctions: flat organic molecules on the Au(111) surface, Physical Chemistry Chemical Physics, vol.80, issue.18, pp.4759-4767, 2010.
DOI : 10.1039/b920121a

L. Wang, L. Liu, W. Chen, Y. Feng, and A. T. Wee, Configuration-Dependent Interface Charge Transfer at a Molecule???Metal Junction, Journal of the American Chemical Society, vol.128, issue.24, pp.8003-8007, 2006.
DOI : 10.1021/ja061741o

L. C. Mayor, J. B. Taylor, G. Magnano, A. Rienzo, C. J. Satterley et al., Photoemission, resonant photoemission, and x-ray absorption of a Ru(II) complex adsorbed on rutile TiO 2 (110) prepared by in situ electrospray deposition, The Journal of Chemical Physics, vol.129, pp.1-9, 2008.

T. D. Märk and P. Scheier, Ionization dynamics: Unexpected electrons, Nature Physics, vol.455, issue.2, pp.82-83, 2010.
DOI : 10.1038/nphys1526

X. Sun, Engineering supramolecular architectures on insulating or metal surfaces studied by scanning tunneling microscopy, 2010.

F. Silly, A robust method for processing scanning probe microscopy images and determining nanoobject position and dimensions, Journal of Microscopy, vol.88, issue.3, pp.211-218, 2009.
DOI : 10.1111/j.1365-2818.2009.03191.x

J. Hieulle and F. Silly, Localized intermolecular electronic coupling in twodimensional self-assembled 310-perylenetetracarboxylic diimide nanoarchitectures, Journal of Materials Chemistry C, vol.49, issue.1, pp.4536-4539, 2013.

M. Mura, F. Silly, G. A. Briggs, M. R. Castell, and L. N. Kantorovich, H-Bonding Supramolecular Assemblies of PTCDI Molecules on the Au(111) Surface, The Journal of Physical Chemistry C, vol.113, issue.52, pp.21840-21848, 2009.
DOI : 10.1021/jp908046t

X. Lu, M. Grobis, K. H. Khoo, S. G. Louie, and M. F. Crommie, Spatially mapping the spectral density of a single C 60 molecule, Physical Review Letters, vol.90, pp.1-4, 2003.

J. N. Shea, A. Saywell, G. Magnano, L. M. Perdigao, C. J. Satterley et al., Photoemission and scanning tunnelling microscopy, Adsorption of PTCDI on Au Surface Science, vol.603, issue.111, pp.3094-3098, 2009.

J. Schnadt, J. N. O-'shea, L. Patthey, J. Krempaský, N. Mårtensson et al., Alignment of valence photoemission, x-ray absorption, and substrate density of states for an adsorbate on a semiconductor surface, Physical Review B, vol.67, issue.23, pp.1-7, 2003.
DOI : 10.1103/PhysRevB.67.235420

J. Schnadt, J. Schiessling, and P. A. Brühwiler, Comparison of the size of excitonic effects in molecular ?? systems as measured by core and valence spectroscopies, Chemical Physics, vol.312, issue.1-3, pp.39-45, 2005.
DOI : 10.1016/j.chemphys.2004.11.019

G. Cabailh, C. R. Henry, and C. Barth, Thin NaCl films on silver (001): island growth and work function, New Journal of Physics, vol.14, issue.10, pp.1-18, 2012.
DOI : 10.1088/1367-2630/14/10/103037

URL : https://hal.archives-ouvertes.fr/hal-00810492

C. Barth, M. Gingras, A. S. Foster, A. Gulans, G. Félix et al., Two-Dimensional Nanostructured Growth of Nanoclusters and Molecules on Insulating Surfaces, Advanced Materials, vol.79, issue.24, pp.3228-3232, 2012.
DOI : 10.1002/adma.201200501

URL : https://hal.archives-ouvertes.fr/hal-00724326

A. S. Foster, C. Barth, and C. R. Henry, Chemical Identification of Ions in Doped NaCl by Scanning Force Microscopy, Physical Review Letters, vol.102, issue.25, pp.1-4, 2009.
DOI : 10.1103/PhysRevLett.102.256103

URL : https://hal.archives-ouvertes.fr/hal-00413553

C. Barth and C. R. Henry, NaCl(001) surfaces nanostructured by Suzuki precipitates: a scanning force microscopy study, New Journal of Physics, vol.11, issue.4, pp.1-18, 2009.
DOI : 10.1088/1367-2630/11/4/043003

URL : https://hal.archives-ouvertes.fr/hal-00386963

C. Barth and C. R. Henry, Surface Double Layer on (001) Surfaces of Alkali Halide Crystals: A Scanning Force Microscopy Study, Physical Review Letters, vol.98, issue.13, pp.1-4, 2007.
DOI : 10.1103/PhysRevLett.98.136804

URL : https://hal.archives-ouvertes.fr/hal-00303603

C. Barth and C. R. Henry, Imaging Suzuki precipitates on NaCl:Mg 2+ (001) by scanning force microscopy, Physical Review Letters, vol.100, pp.1-4, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00303798

D. M. Roessler and W. C. Walker, Electronic Spectra of Crystalline NaCl and KCl, Physical Review, vol.166, issue.3, pp.599-606, 1968.
DOI : 10.1103/PhysRev.166.599

K. Glöckler, M. Sokolowski, A. Soukopp, and E. Umbach, Initial growth of insulating overlayers of NaCl on Ge(100) observed by scanning tunneling microscopy with atomic resolution, Physical Review B, vol.54, issue.11, pp.7705-7708, 1996.
DOI : 10.1103/PhysRevB.54.7705

W. Hebenstreit, J. Redinger, Z. Horozova, M. Schmid, R. Podloucky et al., Atomic resolution by STM on ultra-thin films of alkali halides: experiment and local density calculations, Surface Science, vol.424, issue.2-3, pp.321-328, 1999.
DOI : 10.1016/S0039-6028(99)00095-3

G. Meyer and N. M. Amer, Optical???beam???deflection atomic force microscopy: The NaCl???(001) surface, Applied Physics Letters, vol.56, issue.21, pp.2100-2101, 1990.
DOI : 10.1063/1.102985

X. Sun, M. P. Felicissimo, P. Rudolf, and F. Silly, NaCl multi-layer islands grown on Au(111)-(22\times \sqrt {3} ) probed by scanning tunneling microscopy, Nanotechnology, vol.19, issue.49, pp.1-5, 2008.
DOI : 10.1088/0957-4484/19/49/495307

J. V. Barth, G. Costantini, and K. Kern, Engineering atomic and molecular nanostructures at surfaces, Nature, vol.437, pp.671-679, 2005.
DOI : 10.1142/9789814287005_0008

Y. Pennec, W. Auwärter, A. Schiffrin, A. Weber-bargioni, A. Riemann et al., Supramolecular gratings for tuneable confinement of electrons on metal surfaces, Nature Nanotechnology, vol.67, issue.2, pp.99-103, 2007.
DOI : 10.1038/nnano.2006.212

Y. Yang and C. Wang, Hierarchical construction of self-assembled low-dimensional molecular architectures observed by using scanning tunneling microscopy, Chemical Society Reviews, vol.110, issue.9, pp.2576-2589, 2009.
DOI : 10.1039/b807500j

S. Jensen, J. Greenwood, H. A. Früchtl, and C. J. Baddeley, STM Investigation on the Formation of Oligoamides on Au{111} by Surface-Confined Reactions of Melamine with Trimesoyl Chloride, The Journal of Physical Chemistry C, vol.115, issue.17, pp.8630-8636, 2011.
DOI : 10.1021/jp111237q

J. Greenwood, H. A. Früchtl, and C. J. Baddeley, Ordered Growth of Upright Melamine Species on Ni{111}: A Study with Scanning Tunnelling Microscopy and Reflection Absorption Infrared Spectroscopy, The Journal of Physical Chemistry C, vol.116, issue.11, pp.6685-6690, 2012.
DOI : 10.1021/jp212055u

H. Walch, A. Maier, W. M. Heckl, and M. Lackinger, Isotopological Supramolecular Networks from Melamine and Fatty Acids, The Journal of Physical Chemistry C, vol.113, issue.3, pp.1014-1019, 2009.
DOI : 10.1021/jp8078474

N. Martsinovich and A. Troisi, Modeling the Self-Assembly of Benzenedicarboxylic Acids Using Monte Carlo and Molecular Dynamics Simulations, The Journal of Physical Chemistry C, vol.114, issue.10, pp.4376-4388, 2010.
DOI : 10.1021/jp911671b

P. Szabelski and S. Feyter, Chiral occlusion in two-dimensional binary supramolecular networks studied by the Monte Carlo method, CrystEngComm, vol.373, issue.18, pp.5542-5550, 2011.
DOI : 10.1021/nn200874k

Y. Wang, S. Fabris, G. Costantini, and K. Kern, Tertiary Chiral Domains Assembled by Achiral Metal???Organic Complexes on Cu(110), The Journal of Physical Chemistry C, vol.114, issue.30, pp.13020-13025, 2010.
DOI : 10.1021/jp101439z

R. Gutzler, O. Ivasenko, C. Fu, J. L. Brusso, F. Rosei et al., Halogen bonds as stabilizing interactions in a chiral self-assembled molecular monolayer, Chemical Communications, vol.12, issue.33, pp.9453-9455, 2011.
DOI : 10.1039/c1cc13114a

F. Rosei, M. Schunack, Y. Naitoh, P. Jiang, A. Gourdon et al., Properties of large organic molecules on metal surfaces, Progress in Surface Science, vol.71, issue.5-8, pp.95-146, 2003.
DOI : 10.1016/S0079-6816(03)00004-2

D. S. Deak, F. Silly, K. Porfyrakis, and M. R. Castell, Controlled surface ordering of endohedral fullerenes with a SrTiO 3 template, Nanotechnology, vol.18, pp.1-6, 2007.

C. Lu, E. Zhu, Y. Liu, Z. Liu, Y. Lu et al., (001) Surfaces, The Journal of Physical Chemistry C, vol.114, issue.8, pp.3416-3421, 2010.
DOI : 10.1021/jp910556c

J. Wen and J. Ma, Modulating Morphology of Thiol-Based Monolayers in Honeycomb Hydrogen-Bonded Nanoporous Templates on the Au(111) Surface: Simulations with the Modified Force Field, The Journal of Physical Chemistry C, vol.116, issue.15, pp.8523-8534, 2012.
DOI : 10.1021/jp211206n

L. Cao, Y. Wang, J. Zhong, Y. Han, W. Zhang et al., Electronic structure, chemical interactions and molecular orientations of 3, The Journal of Physical Chemistry C, vol.4910, issue.115, pp.24880-24887, 2011.

S. Sanvito, Molecular spintronics, Chemical Society Reviews, vol.77, issue.6, pp.3336-3355, 2011.
DOI : 10.1039/c1cs15047b

A. Hagfeldt and M. Grätzel, Molecular Photovoltaics, Accounts of Chemical Research, vol.33, issue.5, pp.269-277, 2000.
DOI : 10.1021/ar980112j

C. J. Whiteoak, G. Salassa, and A. W. Kleij, Recent advances with ??-conjugated salen systems, Chem. Soc. Rev., vol.40, issue.2, pp.622-631, 2012.
DOI : 10.1039/C1CS15170C

M. T. Räisänen, F. Mögele, S. Feodorow, B. Rieger, U. Ziener et al., Alkyl chain length defines 2D architecture of salophen complexes on liquid?graphite interface, European Journal of Inorganic Chemistry, vol.25, pp.4028-4034, 2007.

L. Chen, J. Kim, T. Ishizuka, Y. Honsho, A. Saeki et al., Noncovalently Netted, Photoconductive Sheets with Extremely High Carrier Mobility and Conduction Anisotropy from Triphenylene-Fused Metal Trigon Conjugates, Journal of the American Chemical Society, vol.131, issue.21, pp.7287-7292, 2009.
DOI : 10.1021/ja901357h

G. Salassa, M. J. Coenen, S. J. Wezenberg, B. L. Hendriksen, S. Speller et al., Extremely Strong Self-Assembly of a Bimetallic Salen Complex Visualized at the Single-Molecule Level, Journal of the American Chemical Society, vol.134, issue.16, pp.7186-7192, 2012.
DOI : 10.1021/ja3030802

S. Kuck, S. Chang, J. Klöckner, M. H. Prosenc, G. Hoffmann et al., Steering Two-Dimensional Molecular Growth via Dipolar Interaction, ChemPhysChem, vol.62, issue.12, pp.2008-2011, 2009.
DOI : 10.1002/cphc.200900281

A. Dilullo, S. Chang, N. Baadji, K. Clark, J. Klöckner et al., Molecular Kondo Chain, Nano Letters, vol.12, issue.6, pp.3174-3179, 2012.
DOI : 10.1021/nl301149d

M. Viciano-chumillas, J. Hieulle, T. Mallah, and F. Silly, Compact Hydrogen-Bonded Self-Assembly of Ni(II)???Salen Derivative Investigated Using Scanning Tunneling Microscopy, The Journal of Physical Chemistry C, vol.116, issue.44, pp.23404-23407, 2012.
DOI : 10.1021/jp307168k

URL : https://hal.archives-ouvertes.fr/cea-00838063

G. R. Desiraju, Supramolecular Synthons in Crystal Engineering???A New Organic Synthesis, Angewandte Chemie International Edition in English, vol.34, issue.21, pp.2311-2327, 1995.
DOI : 10.1002/anie.199523111

F. Silly, Moiré pattern induced by the electronic coupling between 1-octanol selfassembled monolayers and graphite surface, Nanotechnology, vol.23, pp.1-6, 2012.

Y. Ye, W. Sun, Y. Wang, X. Shao, X. Xu et al., A Unified Model:??? Self-Assembly of Trimesic Acid on Gold, The Journal of Physical Chemistry C, vol.111, issue.28, pp.10138-10141, 2007.
DOI : 10.1021/jp072726o

F. Silly, Two-Dimensional 1,3,5-Tris(4-carboxyphenyl)benzene Self-Assembly at the 1-Phenyloctane/Graphite Interface Revisited, The Journal of Physical Chemistry C, vol.116, issue.18, pp.10029-10032, 2012.
DOI : 10.1021/jp300678m

URL : https://hal.archives-ouvertes.fr/cea-00838043

M. Lackinger and W. M. Heckl, Carboxylic Acids: Versatile Building Blocks and Mediators for Two-Dimensional Supramolecular Self-Assembly, Langmuir, vol.25, issue.19, pp.11307-11321, 2009.
DOI : 10.1021/la900785f

C. Carbone, S. Gardonio, P. Moras, S. Lounis, M. Heide et al., Self-Assembled Nanometer-Scale Magnetic Networks on Surfaces: Fundamental Interactions and Functional Properties, Advanced Functional Materials, vol.73, issue.7, pp.1212-1228, 2011.
DOI : 10.1002/adfm.201001325

F. Silly, M. Pivetta, M. Ternes, F. Patthey, J. P. Pelz et al., Coverage-dependent self-organization: from individual adatoms to adatom superlattices, New Journal of Physics, vol.6, pp.1-13, 2004.
DOI : 10.1088/1367-2630/6/1/016

F. Silly, M. Pivetta, M. Ternes, F. Patthey, J. P. Pelz et al., Creation of an atomic superlattice by immersing metallic adatoms in a twodimensional electron sea, Physical Review Letters, vol.92, pp.1-4, 2004.

N. Weiss, T. Cren, M. Epple, S. Rusponi, G. Baudot et al., Uniform Magnetic Properties for an Ultrahigh-Density Lattice of Noninteracting Co Nanostructures, Physical Review Letters, vol.95, issue.15, pp.1-4, 2005.
DOI : 10.1103/PhysRevLett.95.157204

URL : https://hal.archives-ouvertes.fr/hal-00450795

S. Loth, S. Baumann, C. P. Lutz, D. M. Eigler, and A. J. Heinrich, Bistability in Atomic-Scale Antiferromagnets, Science, vol.335, issue.6065, pp.196-199, 2012.
DOI : 10.1126/science.1214131

V. Iancu, A. Deshpande, and S. Hla, Manipulation of the Kondo Effect via Two-Dimensional Molecular Assembly, Physical Review Letters, vol.97, issue.26, pp.1-4, 2006.
DOI : 10.1103/PhysRevLett.97.266603

R. Otero, M. Schöck, L. M. Molina, E. Laegsgaard, I. Stensgaard et al., Guanine Quartet Networks Stabilized by Cooperative Hydrogen Bonds, Guanine quartet networks stabilized by cooperative hydrogen bonds, pp.2270-2275, 2005.
DOI : 10.1002/anie.200461586

M. Yu, J. Wang, M. Mura, Q. Meng, W. Xu et al., Homochiral Xanthine Quintet Networks Self-Assembled on Au(111) Surfaces, Homochiral xanthine quintet networks self-assembled on Au(111) surfaces, pp.6651-6660, 2011.
DOI : 10.1021/nn202157m

J. T. Davis, 40 Jahre G-Quartetts: von 5???-GMP zur Molekularbiologie und Supramolekularen Chemie, Angewandte Chemie, vol.116, issue.6, pp.684-716, 2004.
DOI : 10.1002/ange.200300589

T. Giorgi, F. Grepioni, I. Manet, P. Mariani, S. Masiero et al., Gel-Like Lyomesophases Formed in Organic Solvents by Self-Assembled Guanine Ribbons, Chemistry - A European Journal, vol.8, issue.9, pp.2143-2152, 2002.
DOI : 10.1002/1521-3765(20020503)8:9<2143::AID-CHEM2143>3.0.CO;2-G

S. J. Sowerby, M. Edelwirth, and W. M. Heckl, Self-Assembly at the Prebiotic Solid???Liquid Interface:?? Structures of Self-Assembled Monolayers of Adenine and Guanine Bases Formed on Inorganic Surfaces, The Journal of Physical Chemistry B, vol.102, issue.30, pp.5914-5922, 1998.
DOI : 10.1021/jp980684l

M. Lukas, R. E. Kelly, L. N. Kantorovich, R. Otero, W. Xu et al., calculations, The Journal of Chemical Physics, vol.130, issue.2, pp.1-9, 2009.
DOI : 10.1063/1.3046690

O. Guillermet, A. Mahmood, J. Yang, J. Echeverria, J. Jeannoutot et al., Seeding Molecular Rotators on a Passivated Silicon Surface, ChemPhysChem, vol.276, issue.2, pp.271-275, 2014.
DOI : 10.1002/cphc.201301015

URL : https://hal.archives-ouvertes.fr/hal-00941550